View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2593_low_31 (Length: 243)
Name: NF2593_low_31
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 3341779 - 3341579
Alignment:
| Q |
18 |
caacattctattataccacttctaattaacatcataaacaaacaaataagtgttaatcaaactttggttaggaaagtcaaaatatttacttgcaaatact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3341779 |
caacattctattataccacttctaattaacatcataaacaaacaaataagtgtta---------------ggaaagtcaaaatatttacttgcaaatact |
3341695 |
T |
|
| Q |
118 |
ccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatctagacatggatcataa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341694 |
ccaattcttgagattgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatctagacatggatcataa |
3341595 |
T |
|
| Q |
218 |
ccacccattacctttg |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3341594 |
ccacccattacctttg |
3341579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 3334256 - 3334129
Alignment:
| Q |
98 |
aatatttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagt |
197 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| ||||||||||||||||| || || ||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
3334256 |
aatatatacttgcaaatactccaattccttagactatgaccatcactggcatgaagggctttctgaacatctggtttgttgtaaaaagctttagcatagt |
3334157 |
T |
|
| Q |
198 |
catctagacatggatcataaccacccat |
225 |
Q |
| |
|
|||| | ||||||||||||||||||||| |
|
|
| T |
3334156 |
catccaaacatggatcataaccacccat |
3334129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 35793188 - 35793310
Alignment:
| Q |
103 |
ttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatct |
202 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
35793188 |
ttacttgcaaatactccaattctttagattatgaccatcactagcatgaagggccttctgaacatctggtctgttatagaaagctttagcatagtcatcc |
35793287 |
T |
|
| Q |
203 |
agacatggatcataaccacccat |
225 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
35793288 |
aagcatgggtcataaccacccat |
35793310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University