View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_4 (Length: 519)
Name: NF2593_low_4
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 393995 - 393504
Alignment:
| Q |
11 |
acatcatcctctctctcattggtttctctttctatttgtcttaaataaatttcttatattttatcaacnnnnnnnnnnnt-catgaagaaaaattaggaa |
109 |
Q |
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| T |
393995 |
acatcatcatctctctcattggtttctctttctatttgtcttaaataaatttcttatattttatcaaaaaaaaaaaaaaaacatgaagaaaaattaggaa |
393896 |
T |
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| Q |
110 |
cac--tgtgttcactcccaatcctttttaaccttgtattcagcttattgcatgtattttttctttcaatactgcatgatgggatttaatgtttatttact |
207 |
Q |
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| T |
393895 |
cacactgtgttcactcccaatcctttttaaccttgtattcagcttattgcatgtattttttctttcaatactgcatgatgggatttaatgtttatttact |
393796 |
T |
|
| Q |
208 |
actatgttggattgtaaaagtttgaacaaatcaacttggttcagactttcatcacttgacttgcaaacttgttgatttttaattgggaaaatgtcattaa |
307 |
Q |
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| T |
393795 |
-----gttggattgtaaaagtttgaacaaatcaacttggttcagactttcatcacttgacttgcaaacttgttgatttttaattgggaaaatgtcattaa |
393701 |
T |
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| Q |
308 |
ggggatgcagtaaaatagacttggcttggaattttattcttccatttaagtttttggtggatgttactgggttctgacgttagtgaattttgtgtacagg |
407 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
393700 |
ggggatgcaggaaaatagacttgacttggaattttattcttccatttaagtttttggtggatgttactgggttctgacgttagtgaattttgtgtacagg |
393601 |
T |
|
| Q |
408 |
gagtgatgttattgacaacaatattgaacaagaactgctttctgaagccgagacagcatgggcccagcgtgaatggtcaatacaacatgtgcttttt |
504 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
393600 |
gagtgatgttattgacagcaatattgaacaagaactgctttctgaagccgagacagcatgggcccagcgtgaatggtcaatacaacatgtgcttttt |
393504 |
T |
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