View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_7 (Length: 445)
Name: NF2593_low_7
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 35443677 - 35443538
Alignment:
| Q |
34 |
tgacatatatttcagattagatacatcaattatctaataaatctaaaatgtcaaactgtgaattataatatctaaataaaaatgttatttattcaaaaag |
133 |
Q |
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| T |
35443677 |
tgacatatatttcagactagatacatcaattatctaataaatctaaaaagtcaaactgtgaattagaatatctaaataaaaatgttatttattcaaaaag |
35443578 |
T |
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| Q |
134 |
tcaaataatttgattttgtaccttgaatatataattttat |
173 |
Q |
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| T |
35443577 |
ttaaataatttgattttgtacattgaatatataattttat |
35443538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 35443393 - 35443279
Alignment:
| Q |
331 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
430 |
Q |
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| T |
35443393 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
35443294 |
T |
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| Q |
431 |
atacacttcactcat |
445 |
Q |
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| T |
35443293 |
atacacttcactcat |
35443279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35443699 - 35443666
Alignment:
| Q |
1 |
ttcatcaaataattgatgtatctgacatatattt |
34 |
Q |
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| T |
35443699 |
ttcattaaataattgatgtatctgacatatattt |
35443666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 6500044 - 6500011
Alignment:
| Q |
54 |
atacatcaattatctaataaatctaaaatgtcaa |
87 |
Q |
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| T |
6500044 |
atacatcaattatttaataaatctaaaatgtcaa |
6500011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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