View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2593_low_8 (Length: 419)
Name: NF2593_low_8
Description: NF2593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2593_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 2947559 - 2947173
Alignment:
| Q |
12 |
aagaatataaatcaatgacatttacatttcaggttagttnnnnnnntttcttcatttttaatgtggcacattgtgtgttaatttatcttatttgaaattc |
111 |
Q |
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| T |
2947559 |
aagaatataaatcaatgacatttacatttcaggttagttaaaaaaatttcttcatttttaatgtggcacattgtgtgttaatttatcttatttgaaattc |
2947460 |
T |
|
| Q |
112 |
aatgaatgatgatttgcacagctcataactgaaactgcaagacttgcaaatatagttccaggaatcttccggaaggcactaagggaaattaattttaagg |
211 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947459 |
aatgaatgatgatttgcacagctcataaccgaaactgcaagacttgcaaatatagttccaggaatcttccggaaggcactaagggaaattaattttaagg |
2947360 |
T |
|
| Q |
212 |
gtatgtgattgctaatttaataatacaacattttcaaatttcaatgttcaagtgcattggtaacttgatgtttaagtaatagtggaaaagcacactatat |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947359 |
gtatgtgattgctaatttaataatacaaaattttcaaatttcaatgttcaagtgcattggtaacttgatgtttaagtaatagtggaaaagcacactatat |
2947260 |
T |
|
| Q |
312 |
ttgacaatgtgacctcattttgtcttcaataatgaacacgtgcaggatataccataccagcaggatgggcaatcatggtgtgtcccc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947259 |
ttgacaatgtgacctcattttgtcttcaataatgaacacgtgcaggatataccataccagcaggatgggcaatcatggtgtgtcccc |
2947173 |
T |
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