View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2594_high_10 (Length: 328)

Name: NF2594_high_10
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2594_high_10
NF2594_high_10
[»] chr8 (1 HSPs)
chr8 (7-301)||(37600236-37600530)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 37600530 - 37600236
Alignment:
Q  7 gaagcaaaggatgtaacaatcagggtgagaggttgattgaaacatcttgtaaaaaccacgttgtccattactcactccgttttcgcatgtaagcatatct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  37600530 gaagcaaaggatgtaacaatcagggtgagaggttgattgaaacatcttgtaaaaactacattgtccattactcactccgttttcgcatgtaagcatatct 37600431  T
Q  107 tttagttgaatacacttataaaaaagccttggttttatatgtttttgnnnnnnnngtctgatctaaactgagttcgtagactataccgtagactcatcaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||| | ||||||||||||| ||||||||| ||||||    
T  37600430 tttagttgaatacacttataaaaaagccttggttttatatgtttttgaaaaaaaagtctaatctaaattaagttcgtagactagaccgtagacccatcaa 37600331  T
Q  207 acttattctcacccctagttacaagatgcaacaattgataatacattaattttatatttgactttgactttcttctctttctattatgctcttct 301  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37600330 atttattctcacccctagttacaagatgcaacaattgataatacattaattttatatttgactttgactttcttctctttctattatgctcttct 37600236  T

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