View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2594_high_2 (Length: 757)

Name: NF2594_high_2
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2594_high_2
NF2594_high_2
[»] chr3 (1 HSPs)
chr3 (1-738)||(52025671-52026404)


Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 738
Target Start/End: Original strand, 52025671 - 52026404
Alignment:
Q  1 gttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtgtgtgaaccaaaattttaaaataatgaaagattggaatgcacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  52025671 gttgtatttttgcggatgttccctcattcacttataagtaaatctaaatacatgtatgtgaaccaaaattttaagataatgaaagattggaatgcacttt 52025770  T
Q  101 aggagaaatttttcagcaagttttttccatgtaacaagttcatggaggctaagcgaaatgttgttgtgttctattatggttcaactagaccattttgtga 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  52025771 aggagaaatttttcagcaagttctttccatgtaacaagttcatggaggctaagagaattgttgttgtgttctattatggttcaactagaccattttgtga 52025870  T
Q  201 agcatgagagagatacaaggccgtgttgaggagatgtcattactttgggttccaggagctcatttaaatacatatctttcgcactttttatataacaaac 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  52025871 agcatgagagagatacaaggccgtgttgagaagatgtcattactttgggttcgaggagctcatttaaatacatatctttcacactttttatataacaaac 52025970  T
Q  301 tagtggctcaaaagtatgttgagcataagagataaaatagaaaacttagaagagcgtcagtctttgatttatttttgacaaaaggcgtagcaatttttat 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||   |||| ||||||||||||||||||||||||||||||||||||||||    
T  52025971 tagtggctcaaaagtatgttgagcattagagataaaatagaaaacttggaag---gtcaatctttgatttatttttgacaaaaggcgtagcaatttttat 52026067  T
Q  401 ataaagttgaaatctatctaattcgtgtaaactaaccatgcgagacactagtgtgttttttacttcatgcatactagtatactatactattcaagacgag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52026068 ataaagttgaaatctatctaattcgtgtaaactaaccatgcgagacactagtgtgttttttacttcatgcatactagtatactatactattcaagacgag 52026167  T
Q  501 attctattttttgttattctcaattcaaacagactagtctctatatttcacaacaagnnnnnnntatgtcatttgtcaagagcatggacccttgggaaat 600  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  52026168 attctattttttgttattctcaattcaaacagactagtctc--tatttcacaacaagaaaaaaatatgtcatttgtcaagagcatggacccttgggaaat 52026265  T
Q  601 ttgcgagggtcaaagtcatggatacctctcatatttgcaccaatcgctcannnnnnnaggtgagaaaacttcctcccgttcaatttcatatccaattgac 700  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||         || |||||||||||||||||||||||||||||||||||||||    
T  52026266 ttgcgagggtcaaagtcatggatacctctcatatttgcacaaatcgctctttttttttggcgagaaaacttcctcccgttcaatttcatatccaattgac 52026365  T
Q  701 gaaggtgacaaagtattt-gggttgtctgatatttgcta 738  Q
     ||| ||||||||||||| ||||||||||||||||||||    
T  52026366 caagctgacaaagtatttggggttgtctgatatttgcta 52026404  T

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