View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_high_4 (Length: 453)
Name: NF2594_high_4
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 39793599 - 39794039
Alignment:
| Q |
1 |
tgttttaatggtgttgatctaattttgaattggatgcgtgaaatgaagttgggatgttgggagtgtgatcatgtgtagattgttgggtgtgactgtgttt |
100 |
Q |
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| T |
39793599 |
tgtttcaatggtgttgatctaattttgaattggatgcgtgaaatgaagttgggatgttgggagtgtgatcatgtgtagattgttgggtgtgactgtgttt |
39793698 |
T |
|
| Q |
101 |
aggggttggaccggtttgagcaccatttttacttgaatttttctaattcggctagttgttctttcatatcacaattttggttaaggtggccatatcaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39793699 |
aggggttggaccggtttgagcaccatttttacttgaatttttctaattcggctggttgttctttcatatcacaattttggttaaggtggccatatcaacc |
39793798 |
T |
|
| Q |
201 |
atagattttgtagatgacgtggagtctgtcatattattgtgtgatctacttttacatacatataagtaaattgttgtgactagtagaagaccgcgctaat |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
39793799 |
atagattttgtagatgacgtggagtctgacatattattgtgtgatctacttttacatacagataagtaaattgttgtgactagtagaagaccgcggtaat |
39793898 |
T |
|
| Q |
301 |
aaatcatttaggggccattagagatggtattttctttatctgcaacttgatcaaacttcaccatgtaaaaatcgttgttgttgttatccattgtttcaaa |
400 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39793899 |
aaatcattcaggggccattagagatggtcttttctttatccgcaacttgatcaaacttcaccatgtaaaaatcgtttttgttgttatccattgtttcaaa |
39793998 |
T |
|
| Q |
401 |
attgtgttggagtttccacatttctttcgtatgtttttcat |
441 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39793999 |
attgtgttggagtttccacatttctttagtatgtttttcat |
39794039 |
T |
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