View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_high_6 (Length: 406)
Name: NF2594_high_6
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 54202982 - 54202582
Alignment:
| Q |
11 |
caaaggataatccgctggggagaggtgtcattggtcaagggttgtccttgtgtgcaggtggttgttgactcattttcttttttagtgtctcaattttgca |
110 |
Q |
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| T |
54202982 |
caaaagataatccgctggggagaggtgtcattggtcaagggttgtccttgtgtgcaggtggttgttgactcattttcttttttagtgtctcaattttgca |
54202883 |
T |
|
| Q |
111 |
gatttatggtttatgatttatggtatcatgtgtttaatcggctagggactgttacaacactgcggaatgaagcgatggctcatctagaacaatttgaagg |
210 |
Q |
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| T |
54202882 |
gatttatggtttatgatttatggtatcatgtgtttaatcggctagggactgttacaacactgcggaatgaagcgatggctcatctataacaatttgaagg |
54202783 |
T |
|
| Q |
211 |
cttcattagtagcggaagtgctctttatttgagagtaagtgtaatttggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaa |
310 |
Q |
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| T |
54202782 |
cttcattagtagcggaagtgcgctttatttgagagtaagtgtaatttggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaa |
54202683 |
T |
|
| Q |
311 |
aacaaa--------------------gattgaagaagtaaaaagg-tcccttggaacgggctgaagtacaaatcaaatagcatggattgtgacattgttc |
389 |
Q |
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| T |
54202682 |
aacaaagatattagtatggatcaaatgattgaagaagtaaaaaggttcccttggaacgggctgaagtacaaataaaatagcatggattgcgacattgttc |
54202583 |
T |
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| Q |
390 |
a |
390 |
Q |
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| T |
54202582 |
a |
54202582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 315
Target Start/End: Original strand, 16718816 - 16718974
Alignment:
| Q |
157 |
gactgttacaacactgcggaatgaagcgatggctcatctagaacaatttgaaggcttcattagtagcggaagtgctctttatttgagagtaagtgtaatt |
256 |
Q |
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|||||||||||||||| | |||| |||||||| |||||||||||||||||||||||| ||| |||| | ||| ||||| ||||||||||| ||||| ||| |
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| T |
16718816 |
gactgttacaacactgtgaaatgcagcgatgggtcatctagaacaatttgaaggcttgattggtagtgaaagagctctctatttgagagttagtgtcatt |
16718915 |
T |
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| Q |
257 |
tggattgctgccatatggagcgtttggaaatcaagaaatgataagctgtttaaaaacaa |
315 |
Q |
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| T |
16718916 |
tggtttgctggcatatggagcatttgaaaatcaagaaatgataagctgcttaaaaacaa |
16718974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 30553480 - 30553444
Alignment:
| Q |
279 |
tttggaaatcaagaaatgataagctgtttaaaaacaa |
315 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |
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| T |
30553480 |
tttgaaaatcaagaaatgataagttgtttaaaaacaa |
30553444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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