View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_11 (Length: 329)
Name: NF2594_low_11
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 40465731 - 40466034
Alignment:
| Q |
14 |
tatgcaggagagcataattgaagagattgaagacgatttggattctgagcattatgatgcatctgtggattccgataaaatcaatattttctcacctgaa |
113 |
Q |
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| T |
40465731 |
tatgcaggagagcataattgaagagattgaagacgatttggattctgagcattatgatgcatctgtggattccgataaaatcaatattttctcacctgaa |
40465830 |
T |
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| Q |
114 |
cctaagaaaaatatcaaggatgaagatgttgaacaaaaagtatatcgatcaaaccagaagaatcaaatgaattctcccaatatctctcctatggaatctc |
213 |
Q |
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| T |
40465831 |
cctaagaaaaatatcaaggatgaagatgttgaaccaaaagtatatcgatcaaaccagaagaatcaaatgaattctcccaatatctctcctatggaatctc |
40465930 |
T |
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| Q |
214 |
caagaagagcttcaaattattcatctacaaatcctctccgtaggaaaagagaatcgaagtttttgcggttactatctaatcgttttacgggatcaattgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465931 |
caagaagagcttcaaattattcatctacaaatcctctccgtaggaaaaaagaatcgaagtttttgcggttactatctaatcgttttacgggatcaattgt |
40466030 |
T |
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| Q |
314 |
ttct |
317 |
Q |
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|||| |
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| T |
40466031 |
ttct |
40466034 |
T |
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