View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_15 (Length: 286)
Name: NF2594_low_15
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 45288327 - 45288478
Alignment:
| Q |
27 |
ttatccgtaataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagtaaaacataaaaatgataatttaccatcca |
126 |
Q |
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| T |
45288327 |
ttatctgtaataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagt-aaacataaaaatggtaatttagcatcca |
45288425 |
T |
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| Q |
127 |
tgag--------atcacatttttctttgacctcagaacttgattatgagtaaa |
171 |
Q |
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| T |
45288426 |
tgagagactcatatcacctttttctttaacctcggcacttgattatgagtaaa |
45288478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 31608453 - 31608309
Alignment:
| Q |
34 |
taataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagtaaaacataaaaatgataatttaccatccatgag--- |
130 |
Q |
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| T |
31608453 |
taataaaagttgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagt-aaacataaaaatggtaatttagcatccatgagaga |
31608355 |
T |
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| Q |
131 |
-----atcacatttttctttgacctcagaacttgattatgagtaaa |
171 |
Q |
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| T |
31608354 |
ctcatatcacctttttctttaacctcggcacttgattatgagtaaa |
31608309 |
T |
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