View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2594_low_19 (Length: 271)

Name: NF2594_low_19
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2594_low_19
NF2594_low_19
[»] chr8 (14 HSPs)
chr8 (8-154)||(38613611-38613757)
chr8 (151-271)||(6311097-6311217)
chr8 (175-271)||(39784989-39785086)
chr8 (153-271)||(7290092-7290211)
chr8 (175-271)||(25328443-25328540)
chr8 (175-268)||(35745213-35745308)
chr8 (154-271)||(36979184-36979298)
chr8 (154-271)||(4760252-4760366)
chr8 (154-263)||(30655448-30655552)
chr8 (145-263)||(10689328-10689442)
chr8 (154-263)||(18853353-18853457)
chr8 (154-258)||(18870749-18870849)
chr8 (175-268)||(10684432-10684528)
chr8 (190-271)||(33037982-33038063)
[»] chr7 (15 HSPs)
chr7 (175-271)||(31109748-31109844)
chr7 (175-268)||(24024496-24024589)
chr7 (175-271)||(12396735-12396831)
chr7 (175-271)||(12406155-12406251)
chr7 (175-271)||(4866553-4866649)
chr7 (152-263)||(2057763-2057871)
chr7 (154-271)||(20357723-20357837)
chr7 (175-271)||(19992135-19992231)
chr7 (175-271)||(21812405-21812501)
chr7 (154-264)||(1533626-1533730)
chr7 (175-268)||(16879894-16879990)
chr7 (175-268)||(16884750-16884846)
chr7 (175-268)||(24261491-24261587)
chr7 (175-268)||(24266370-24266466)
chr7 (154-210)||(21645818-21645871)
[»] chr6 (14 HSPs)
chr6 (175-271)||(14737742-14737838)
chr6 (175-271)||(14742601-14742697)
chr6 (175-271)||(11856795-11856891)
chr6 (175-271)||(22010862-22010958)
chr6 (175-268)||(28155739-28155832)
chr6 (175-271)||(28184325-28184424)
chr6 (175-271)||(6438324-6438419)
chr6 (175-268)||(6005239-6005334)
chr6 (154-271)||(30125970-30126084)
chr6 (193-268)||(5343322-5343397)
chr6 (193-268)||(33330615-33330690)
chr6 (175-268)||(33336112-33336207)
chr6 (175-268)||(16838566-16838661)
chr6 (154-227)||(5674987-5675057)
[»] chr5 (21 HSPs)
chr5 (153-271)||(1457327-1457446)
chr5 (154-271)||(27444771-27444889)
chr5 (154-271)||(43592080-43592198)
chr5 (154-271)||(43598525-43598643)
chr5 (154-271)||(43604017-43604135)
chr5 (154-271)||(43609509-43609627)
chr5 (154-271)||(27449615-27449733)
chr5 (175-271)||(15044512-15044606)
chr5 (175-271)||(28807741-28807837)
chr5 (171-271)||(30631227-30631326)
chr5 (175-268)||(37556792-37556887)
chr5 (175-268)||(37561614-37561709)
chr5 (175-268)||(2785197-2785292)
chr5 (175-268)||(31402018-31402113)
chr5 (175-265)||(31397164-31397256)
chr5 (193-268)||(33791158-33791233)
chr5 (193-268)||(33768021-33768096)
chr5 (154-219)||(31180079-31180142)
chr5 (154-210)||(38191983-38192036)
chr5 (154-210)||(38219208-38219261)
chr5 (154-210)||(35387474-35387527)
[»] chr4 (11 HSPs)
chr4 (153-271)||(51520257-51520376)
chr4 (175-271)||(9224572-9224668)
chr4 (175-271)||(9229359-9229455)
chr4 (153-271)||(56146877-56146996)
chr4 (175-271)||(45347983-45348079)
chr4 (175-271)||(45357462-45357558)
chr4 (175-271)||(3813846-3813943)
chr4 (175-271)||(5732486-5732581)
chr4 (175-271)||(18855549-18855645)
chr4 (154-271)||(29760449-29760562)
chr4 (154-271)||(24741748-24741861)
[»] chr2 (10 HSPs)
chr2 (175-271)||(39812153-39812250)
chr2 (175-271)||(44312789-44312885)
chr2 (175-271)||(32246607-32246704)
chr2 (175-268)||(19344243-19344337)
chr2 (175-268)||(19349101-19349195)
chr2 (152-271)||(11099103-11099219)
chr2 (154-271)||(14291295-14291409)
chr2 (154-271)||(9296577-9296691)
chr2 (154-210)||(25403443-25403496)
chr2 (154-210)||(25398305-25398358)
[»] scaffold0135 (1 HSPs)
scaffold0135 (175-271)||(35227-35323)
[»] chr3 (17 HSPs)
chr3 (175-271)||(22173360-22173456)
chr3 (175-271)||(18656256-18656351)
chr3 (152-271)||(7167049-7167164)
chr3 (175-268)||(2677256-2677351)
chr3 (154-271)||(2671762-2671876)
chr3 (175-268)||(2673100-2673195)
chr3 (175-268)||(8512037-8512132)
chr3 (175-268)||(8516917-8517012)
chr3 (175-268)||(10207755-10207850)
chr3 (154-270)||(28504033-28504145)
chr3 (201-268)||(24967957-24968024)
chr3 (154-263)||(40372980-40373085)
chr3 (154-263)||(8739249-8739354)
chr3 (154-263)||(9091487-9091592)
chr3 (175-268)||(32475306-32475402)
chr3 (175-268)||(32480163-32480260)
chr3 (153-227)||(8477170-8477242)
[»] scaffold0355 (2 HSPs)
scaffold0355 (175-271)||(9805-9902)
scaffold0355 (175-271)||(52-143)
[»] chr1 (10 HSPs)
chr1 (175-271)||(41398060-41398160)
chr1 (175-249)||(41386571-41386646)
chr1 (175-271)||(25445256-25445352)
chr1 (175-271)||(39445322-39445418)
chr1 (175-271)||(44024039-44024135)
chr1 (175-271)||(1055178-1055274)
chr1 (193-268)||(43988634-43988709)
chr1 (154-271)||(24202942-24203054)
chr1 (190-263)||(24787550-24787624)
chr1 (154-210)||(19359079-19359132)
[»] scaffold0127 (1 HSPs)
scaffold0127 (175-249)||(34136-34211)
[»] scaffold0464 (1 HSPs)
scaffold0464 (175-271)||(185-281)
[»] scaffold0197 (2 HSPs)
scaffold0197 (175-268)||(19333-19428)
scaffold0197 (175-268)||(14477-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (175-268)||(149124-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (175-268)||(2419-2514)
[»] scaffold0479 (1 HSPs)
scaffold0479 (175-236)||(13171-13233)
[»] scaffold0978 (1 HSPs)
scaffold0978 (153-263)||(422-528)
[»] scaffold0009 (1 HSPs)
scaffold0009 (175-268)||(182132-182228)
[»] scaffold0188 (1 HSPs)
scaffold0188 (154-210)||(24278-24331)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  8 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  108 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 154  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 6311097 - 6311217
Alignment:
Q  151 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcc 250  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||     
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  251 aacaacaacaaaacagcccta 271  Q
    |||||||||||| ||||||||    
T  6311197 aacaacaacaaagcagcccta 6311217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 39785086 - 39784989
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaacaaaacagcccta 39784989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 7290211 - 7290092
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  252 acaacaacaaaacagcccta 271  Q
    ||||||||||| ||||||||    
T  7290111 acaacaacaaagcagcccta 7290092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 25328540 - 25328443
Alignment:
Q  175 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacaacccta 25328443  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 35745213 - 35745308
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 35745308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 36979184 - 36979298
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||||| |  ||||||| |||||| ||||    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaag-caac 36979279  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  36979280 aacaacaaaaacagcccta 36979298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 4760366 - 4760252
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||| |||||||  |||||| |||||||||||| || ||||||| ||||||||||| | ||||||| |||||| ||||    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaa--aaacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaag-caac 4760271  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  4760270 aacaacaaaaacagcccta 4760252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 30655448 - 30655552
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||| |||||||||| |  ||||||| |||||| ||||    
T  30655448 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaag-caac 30655542  T
Q  254 aacaacaaaa 263  Q
    ||||||||||    
T  30655543 aacaacaaaa 30655552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 10689442 - 10689328
Alignment:
Q  145 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctc 244  Q
    ||||| || ||||||| || |||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| ||||| |||||  | |||||| ||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  245 caagccaacaacaacaaaa 263  Q
    |||| ||||||||||||||    
T  10689345 caag-caacaacaacaaaa 10689328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 18853457 - 18853353
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||||||| |    |||||| ||||||||||||||| ||||||| ||||| |||||  |||||||| ||||||| |||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacg----aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  254 aacaacaaaa 263  Q
    ||||| ||||    
T  18853362 aacaaaaaaa 18853353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 18870849 - 18870749
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| || ||||| |||||   ||||||| ||||||| |||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  254 aacaa 258  Q
    |||||    
T  18870753 aacaa 18870749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 10684528 - 10684432
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 10684432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 33038063 - 33037982
Alignment:
Q  190 aaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaaca--aaacagcccta 271  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |  ||||||| |||||| |||||||||||  |||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaag-caacaacaacaataaacagcccta 33037982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 31109844 - 31109748
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 31109748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 24024589 - 24024496
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcc 24024496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 12396735 - 12396831
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagcccta 12396831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 12406155 - 12406251
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagcccta 12406251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 4866553 - 4866649
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtccta 4866649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 2057763 - 2057871
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| ||||| |||||  |||||||| ||||||| |    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  252 acaacaacaaaa 263  Q
    ||||||||||||    
T  2057860 acaacaacaaaa 2057871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 20357837 - 20357723
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||| ||||| |||||  |||||||||||||||| |||    
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  20357741 aacaacaaaaacagcccta 20357723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 19992135 - 19992231
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||  |||||||  |||||||| |||||||||||    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaac-aaacagcccta 19992231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 21812501 - 21812405
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||| ||||| |||||| |||||||  ||||||| ||||||||| |||||||||||    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaac-aaacagcccta 21812405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 1533730 - 1533626
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||   |||||| ||||||||||||| |||  || |||||| ||||    
T  1533730 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaag-caac 1533637  T
Q  254 aacaacaaaac 264  Q
    |||||||||||    
T  1533636 aacaacaaaac 1533626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 16879894 - 16879990
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 16879990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 16884750 - 16884846
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 16884846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 24261587 - 24261491
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 24261491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 24266466 - 24266370
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 24266370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 21645818 - 21645871
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 21645871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 14737838 - 14737742
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 14737742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 14742697 - 14742601
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagcccta 14742601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 11856795 - 11856891
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 11856891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 22010958 - 22010862
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgcccta 22010862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 28155832 - 28155739
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaacaaaacagcc 28155739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 28184325 - 28184424
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaac--aaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 6438324 - 6438419
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  ||||||| ||||||||| |||||||||||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaac-aaacagcccta 6438419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 6005239 - 6005334
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 6005334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 30126084 - 30125970
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||||||||| |||||  |||||||||||||||| |||    
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  254 aacaac-aaaacagcccta 271  Q
     ||||| ||||||||||||    
T  30125988 tacaacaaaaacagcccta 30125970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 5343322 - 5343397
Alignment:
Q  193 caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 5343397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 33330690 - 33330615
Alignment:
Q  193 caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 33330615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 33336207 - 33336112
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||  ||||||| |||||| | ||||||||||||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaacaaaacagcc 33336112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 16838566 - 16838661
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| |||||  ||||||| || ||||| ||||||||||||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaacaaaacagcc 16838661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 5675057 - 5674987
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaa 227  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||||||| |||||||    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaa 5674987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 1457446 - 1457327
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  252 acaacaacaaaacagcccta 271  Q
    ||||||||||| ||||||||    
T  1457346 acaacaacaaagcagcccta 1457327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 27444771 - 27444889
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||| | ||||||||    
T  27444871 caacaacatagcagcccta 27444889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 43592080 - 43592198
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||||| ||||||||    
T  43592180 caacaacaaagcagcccta 43592198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 43598525 - 43598643
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||||| ||||||||    
T  43598625 caacaacaaagcagcccta 43598643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 43604017 - 43604135
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||||| ||||||||    
T  43604117 caacaacaaagcagcccta 43604135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 43609509 - 43609627
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||||| ||||||||    
T  43609609 caacaacaaagcagcccta 43609627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 27449615 - 27449733
Alignment:
Q  154 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  253 caacaacaaaacagcccta 271  Q
    |||||||| | ||||||||    
T  27449715 caacaacatagcagcccta 27449733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 15044512 - 15044606
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||  |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagcccta 15044606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 28807837 - 28807741
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaac-aaacagcccta 28807741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 30631227 - 30631326
Alignment:
Q  171 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagccct 270  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| | |||| |||||||||||||||||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaag-caacaacaacaaaacagccct 30631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 37556887 - 37556792
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaacaaaacagcc 37556792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 37561709 - 37561614
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaacaaaacagcc 37561614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 2785197 - 2785292
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 2785292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 31402113 - 31402018
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 31402018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 31397256 - 31397164
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaaca 265  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| |||||||||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaaca 31397164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 33791158 - 33791233
Alignment:
Q  193 caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 33791233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 33768021 - 33768096
Alignment:
Q  193 caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||||  |||||||| ||||||||||||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaacaaaacagcc 33768096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 219  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 38191983 - 38192036
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 38192036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 38219208 - 38219261
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 38219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 51520257 - 51520376
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  252 acaacaacaaaacagcccta 271  Q
    ||||||||||| ||||||||    
T  51520357 acaacaacaaagcagcccta 51520376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 9224668 - 9224572
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 9224572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 9229455 - 9229359
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 9229359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 56146996 - 56146877
Alignment:
Q  153 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  252 acaacaacaaaacagcccta 271  Q
    ||||||||||| ||||||||    
T  56146896 acaacaacaaagcagcccta 56146877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 45348079 - 45347983
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtccta 45347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 45357558 - 45357462
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtccta 45357462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 3813846 - 3813943
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtccta 3813943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 5732486 - 5732581
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    |||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagcccta 5732581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 18855549 - 18855645
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaac-aaacagcccta 18855645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 29760449 - 29760562
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| | |  ||||||| |||||| ||||    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaag-caac 29760544  T
Q  254 aacaacaaaacagcccta 271  Q
    |||||||||||| |||||    
T  29760545 aacaacaaaacaacccta 29760562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 24741748 - 24741861
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||| |||||||||| |  ||||||| |||||| ||||    
T  24741748 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaag-caac 24741842  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  24741843 aacaacaaaaacagcccta 24741861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 39812250 - 39812153
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 39812153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 44312885 - 44312789
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgcccta 44312789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 32246607 - 32246704
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtccta 32246704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 19344243 - 19344337
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaacaaaacagcc 19344337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 19349101 - 19349195
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaacaaaacagcc 19349195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 271
Target Start/End: Complemental strand, 11099219 - 11099103
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||||| |  ||||||| |||||| ||    
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaag-ca 11099124  T
Q  252 acaacaac-aaaacagcccta 271  Q
    |||||||| ||||||||||||    
T  11099123 acaacaacaaaaacagcccta 11099103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 14291295 - 14291409
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||||| ||||||||| | | ||||||| ||||||| |||    
T  14291295 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  14291391 aacaacaaaaacagcccta 14291409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 9296691 - 9296577
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||| ||||| ||||| | ||||||| ||||||| |||    
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  9296595 aacaacaaaaacagcccta 9296577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25403443 - 25403496
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 25403496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 25398305 - 25398358
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaa 25398358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 35323 - 35227
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 35227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 22173456 - 22173360
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagcccta 22173360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 18656256 - 18656351
Alignment:
Q  175 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    |||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagcccta 18656351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 271
Target Start/End: Original strand, 7167049 - 7167164
Alignment:
Q  152 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcca 251  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||| ||||| ||||| | ||||||| |||||| ||    
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaag-ca 7167144  T
Q  252 acaacaacaaaacagcccta 271  Q
    ||||||||||||||||||||    
T  7167145 acaacaacaaaacagcccta 7167164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 2677351 - 2677256
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||| ||||||||||||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaacaaaacagcc 2677256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 2671876 - 2671762
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||| ||||||| ||||| |||||  |||||||||||||||| |||    
T  2671876 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  254 aacaac-aaaacagcccta 271  Q
    |||||| ||||||||||||    
T  2671780 aacaacaaaaacagcccta 2671762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 2673195 - 2673100
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||  |||||| |||||||| ||||||||||||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaacaaaacagcc 2673100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 8512037 - 8512132
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||  ||||||| ||||||||||||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaacaaaacagcc 8512132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 8516917 - 8517012
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||  ||||||| ||||||||||||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaacaaaacagcc 8517012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 10207755 - 10207850
Alignment:
Q  175 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 10207850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 28504145 - 28504033
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||||||||| ||||||| ||||||| |||||| ||||    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaag-caac 28504050  T
Q  254 aacaacaaaacagccct 270  Q
    |||||||||||||||||    
T  28504049 aacaacaaaacagccct 28504033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 24967957 - 24968024
Alignment:
Q  201 tgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  24967957 tgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 24968024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 40373085 - 40372980
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||||||| ||||||||| | | ||||||| ||||||| |||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T
Q  254 aacaacaaaa 263  Q
    |||| |||||    
T  40372989 aacatcaaaa 40372980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 8739354 - 8739249
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| | ||||||| ||||||||||||||   |||||| |||||||||||||||  |||||| ||||| |||||  |||||||| ||||||| ||     
T  8739354 tgttgtgaattcggttgagactcacaccaatga---aaacaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  254 aacaacaaaa 263  Q
    ||||||||||    
T  8739258 aacaacaaaa 8739249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 9091592 - 9091487
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| | ||||||| ||||||||||||||   |||||| |||||||||||||||  |||||| ||||| |||||  |||||||| ||||||| ||     
T  9091592 tgttgtgaattcggttgagactcacaccaatga---aaacaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  254 aacaacaaaa 263  Q
    ||||||||||    
T  9091496 aacaacaaaa 9091487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 32475306 - 32475402
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||| | || ||||||||||||||||    
T  32475306 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaaactaatcaacaacaaaacagcc 32475402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 32480163 - 32480260
Alignment:
Q  175 tcacaccaatga-aataaa--caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| ||||||  ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||| | || ||||||||||||||||    
T  32480163 tcacaccaatgagaataaatccaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaaactaatcaacaacaaaacagcc 32480260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 8477170 - 8477242
Alignment:
Q  153 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaa 227  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||||||| |||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaa 8477242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 9902 - 9805
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaacaaaacagcccta 9805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 143 - 52
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    |||||||||| |||||||| |||||||||||||||||||||||      |||||||||| |||||||||||||||  |||||||||||||||||||||    
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtgata------atcaatgagagcaaatggtctccaagtaaacaacaacaaaacagcccta 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 41398060 - 41398160
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc---caacaacaacaaaacagccct 270  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaacaacaaaacagccct 41398159  T
Q  271 a 271  Q
    |    
T  41398160 a 41398160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 41386571 - 41386646
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc 41386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 25445352 - 25445256
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaac-aaacagcccta 25445256  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 39445322 - 39445418
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||||| |||||||||||    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaac-aaacagcccta 39445418  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 44024135 - 44024039
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaac-aaacagcccta 44024039  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 1055274 - 1055178
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   |||||||  |||||||| |||||||||||    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaac-aaacagcccta 1055178  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 43988709 - 43988634
Alignment:
Q  193 caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||  ||||||| ||||||||||||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaacaaaacagcc 43988634  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 24203054 - 24202942
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaac 253  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |  |||| ||||| ||| |   |||  |||||||||| |||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagggagtggtaatctatgtg--taaagtgtctccaagcaaac 24202960  T
Q  254 aacaacaaaacagcccta 271  Q
    ||||||||||||||||||    
T  24202959 aacaacaaaacagcccta 24202942  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 24787624 - 24787550
Alignment:
Q  190 aaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc--caacaacaacaaaa 263  Q
    |||||| ||||||||||||||| ||||||| |||| |||||| | ||||||| |||||||  ||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaacaacaacaacaaaa 24787550  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

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Target: scaffold0127 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 34211 - 34136
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc 249  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagc 34136  T

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Target: scaffold0464 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 185 - 281
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta 271  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaac-aaacagcccta 281  T

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Target: scaffold0197 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 19428 - 19333
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 19333  T

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Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 14573 - 14477
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 14477  T

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Target: scaffold0028 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 149219 - 149124
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 149124  T

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Target: scaffold0259 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 2514 - 2419
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  ||||||| |||||  ||||||| |||||||| ||||||||||||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaacaaaacagcc 2419  T

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Target: scaffold0479 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  175 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtgataatcaatgagaacaa 236  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

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Target: scaffold0978 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 528 - 422
Alignment:
Q  153 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa 252  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||| ||||| ||||| | ||||||| |||||| |||    
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaag-caa 433  T
Q  253 caacaacaaaa 263  Q
    |||||||||||    
T  432 caacaacaaaa 422  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 182228 - 182132
Alignment:
Q  175 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaa-caacaacaaaacagcc 268  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| | ||||| |||||  ||||||| |||||||| || ||||||||||||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagctaatcaacaacaaaacagcc 182132  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 24331 - 24278
Alignment:
Q  154 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 210  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 24278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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