View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2594_low_20 (Length: 260)
Name: NF2594_low_20
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7947482 - 7947724
Alignment:
| Q |
1 |
tttgtttgatatctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947482 |
tttgtttgatatctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgcta |
7947581 |
T |
|
| Q |
101 |
aagctgaatttgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaaatttaatgtacgtttgtttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947582 |
aagctgaatttgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaaatttaatgtacgtttgtttt |
7947681 |
T |
|
| Q |
201 |
ctttttgtttgcacgcattctcatcgcgttttatatgctgttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7947682 |
ctttttgtttgcacgcattctcatcgcgttttatatgctgttc |
7947724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32999308 - 32999487
Alignment:
| Q |
1 |
tttgtttgatatctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatgaggagtgatggttttgtgaatgttaacgatttgcta |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||| ||| |
|
|
| T |
32999308 |
tttgtttaatatctgcaggacgcgaattttacgtcatatggcatctgacttgaaattgaatatgagaagtgatggttatgtgaatgttaatgatttacta |
32999407 |
T |
|
| Q |
101 |
aagctgaatttgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaa |
180 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32999408 |
tacctgaatttgaaaacatttgctaatattcctctacgatcccacactattgacgacatcagggaggtcagttgatctaa |
32999487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 10803454 - 10803636
Alignment:
| Q |
2 |
ttgtttgatatctgcaggacacgaattttacgtcatatggcatctgagttgaaattgaatatg----aggagtgatggttttgtgaatgttaacgatttg |
97 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||| ||||| |
|
|
| T |
10803454 |
ttgtttaatatctgcaggacacgaattctacgtcatatggcgtctgagttgaaattgaatatatatcagaagtgatggttatgtgaatgttaatgattta |
10803553 |
T |
|
| Q |
98 |
ctaaagctgaatttgaagacatttgctaatattcctctacgatcccacactattgatgacattagggaggtcagttgatctaa |
180 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
10803554 |
ctaaacctaaatttcaagacatttgctaatattcctctacgatcccacactattgatgatattagggaggtctgttgatctaa |
10803636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University