View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_22 (Length: 250)
Name: NF2594_low_22
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 36078279 - 36078521
Alignment:
| Q |
8 |
gattatactattaggcaaggaatcctcccaatttattgaaggttaggcgatgctagagtagccgagatagggaattgattctttctcgatgacactaact |
107 |
Q |
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| T |
36078279 |
gattatactattaggcaaggaatcctcccaatttattgaaggttaggcgatgctagagtagccgagataaggaattgattctttctcgatgacactaact |
36078378 |
T |
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| Q |
108 |
cggtatgtgggtcggcaaagcctccaaactaagtcaaaacacagtataaataacatatactttatcgataggtgggttaagtattaataatatacttctc |
207 |
Q |
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| T |
36078379 |
cggtatgtgggtcggcaaagcctccaaactaagtcaaaacacagtataaataacatatactttatcgataggtgggttaagtattaataatatacttctc |
36078478 |
T |
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| Q |
208 |
ccactattttcaataatattcatttttccattcccattatttt |
250 |
Q |
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| T |
36078479 |
ccactattttcaataatattcatttttccattcccattatttt |
36078521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 36078510 - 36078543
Alignment:
| Q |
206 |
tcccactattttcaataatattcatttttccatt |
239 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
36078510 |
tcccattattttcaataatattcatttttccatt |
36078543 |
T |
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