View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_25 (Length: 238)
Name: NF2594_low_25
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_25 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 27079089 - 27079307
Alignment:
| Q |
20 |
tacccggaccagacccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaacctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27079089 |
tacccggaccagacccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttcacctt |
27079188 |
T |
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| Q |
120 |
agactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgataca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
27079189 |
agactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataaggaaacaaactttggtgacatgacaca |
27079288 |
T |
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| Q |
220 |
gattcagtaactttacccc |
238 |
Q |
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||||||||||||||||||| |
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| T |
27079289 |
gattcagtaactttacccc |
27079307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 27065381 - 27065585
Alignment:
| Q |
29 |
cagacccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaaccttagactcagg |
128 |
Q |
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||||||||||||||||||||||||| || || | |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| | || |
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| T |
27065381 |
cagacccaagagccatgaatgcaccatgggtggagctccaagcagttgtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactgg |
27065480 |
T |
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| Q |
129 |
atctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacagattcagta |
228 |
Q |
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| T |
27065481 |
atccaatagatccgcttcatagacatgaacatttggaaccgagtgacagtagtataacaaataaggaaacaaactctggtgacacgatacagattcagta |
27065580 |
T |
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| Q |
229 |
acttt |
233 |
Q |
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||||| |
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| T |
27065581 |
acttt |
27065585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 27052942 - 27053122
Alignment:
| Q |
32 |
acccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaaccttagactcaggatc |
131 |
Q |
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||||||||| |||||||||||| || || || ||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| ||| || |
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| T |
27052942 |
acccaagagtcatgaatgcaccatgagtgggactccaagcagttgtatccaagtgacagatcgcaacaccatgatttatcttcaccttagacttagggtc |
27053041 |
T |
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| Q |
132 |
taaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgaca |
212 |
Q |
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| T |
27053042 |
caaaagattcgcttcataaattcgaatatttggcaccgaatgacagtaatatagcaagtaaggaaacaaactttgatgaca |
27053122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 14866665 - 14866465
Alignment:
| Q |
21 |
acccggaccagacccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtgacaaatagcaacaccatgatttatcttaacctta |
120 |
Q |
| |
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||||||||| |||||||||| ||| || ||||| || ||||| |||||| ||| ||||| || ||||||| |||||| || ||||| |||||| | ||| |
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| T |
14866665 |
acccggacccgacccaagagacataaaagcaccatgagttggactccaatcagaagtatccaaatgacaaacagcaaccccttgattgatcttatcttta |
14866566 |
T |
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| Q |
121 |
gactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagcaaataagggaacaaactttggtgacacgatacag |
220 |
Q |
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|| || || | || || |||| |||||| |||||||| ||||||||||| ||||| || |||||||| || |||||||| || |||||||| |||| |
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| T |
14866565 |
ctcttcgggtcaagtagctccgcttgataaacccgaaccttaggaaccgagtgacaataataaagcaaatacggaaacaaactctgatgacacgaaacag |
14866466 |
T |
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| Q |
221 |
a |
221 |
Q |
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| T |
14866465 |
a |
14866465 |
T |
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