View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2594_low_29 (Length: 204)

Name: NF2594_low_29
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2594_low_29
NF2594_low_29
[»] chr4 (2 HSPs)
chr4 (1-198)||(24216233-24216430)
chr4 (7-127)||(16841381-16841501)
[»] chr5 (15 HSPs)
chr5 (4-198)||(37698260-37698454)
chr5 (4-198)||(37641345-37641542)
chr5 (13-198)||(37704135-37704320)
chr5 (48-198)||(37430224-37430374)
chr5 (1-112)||(37391437-37391548)
chr5 (4-119)||(37595876-37595991)
chr5 (4-198)||(37380822-37381022)
chr5 (4-112)||(37399302-37399410)
chr5 (4-194)||(37411805-37411998)
chr5 (5-119)||(37437247-37437361)
chr5 (5-119)||(37713170-37713284)
chr5 (4-118)||(37825460-37825574)
chr5 (4-113)||(37534652-37534761)
chr5 (13-126)||(37441485-37441596)
chr5 (134-198)||(37391584-37391648)
[»] chr3 (2 HSPs)
chr3 (10-109)||(14554615-14554714)
chr3 (134-198)||(14554499-14554563)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 24216233 - 24216430
Alignment:
Q  1 tcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24216233 tcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgt 24216332  T
Q  101 caacacttcatctgaacccgatatttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  24216333 caacacttcatctgaacccgatatttggtctatgtgttccactttttatttcaggacggaatcctggaaaaatggtgcagattgttgcgagtgggatg 24216430  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 16841381 - 16841501
Alignment:
Q  7 tgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacac 106  Q
    ||||| |||||||||| ||||||||  ||||||  |||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||  |||||||||    
T  16841381 tgctgctgcttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacac 16841480  T
Q  107 ttcatctgaacccgatatttg 127  Q
    ||||||| |||  ||||||||    
T  16841481 ttcatctcaacttgatatttg 16841501  T

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Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 37698454 - 37698260
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| |||||||||||||||||||||| |||||   |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||   || ||    
T  37698454 tgttgttgttgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaa 37698355  T
Q  104 cacttcatctgaacccgatatttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    |||||| ||| |||| |||||||||||||  ||||||||||||| || |||||  ||||| ||||||||   |||| |||||||| |||||||||    
T  37698354 cacttcgtctcaacctgatatttggtctagatgttcctctttttcttccaggacagaatcttggaaaaacaatacagattgttgcaagtgggatg 37698260  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 4 - 198
Target Start/End: Complemental strand, 37641542 - 37641345
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| ||||| |||||||||||||||| ||||||| |||| | |||||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||    
T  37641542 tgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaa 37641443  T
Q  104 cacttcatctgaacc---cgatatttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    |||||||||| ||||   |||||||| |||||  ||| ||||||||| ||||| ||  ||||| ||||||||   |||| ||||||| ||||||||||    
T  37641442 cacttcatctaaaccggacgatattttgtctagttgtccctctttttctttcaagacagaatcttggaaaaacaatacagattgttgtgagtgggatg 37641345  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 37704320 - 37704135
Alignment:
Q  13 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 112  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||| ||||| || || || ||||||||||||||  ||||||||  |||||||||||||||    
T  37704320 tgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatc 37704221  T
Q  113 tgaacccgatatttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    | |||||| | ||  |||||||||||  ||||||| ||| | ||  ||||| |||||||  || ||| ||||||||||||||||||    
T  37704220 taaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaaccggcacagattgttgcgagtgggatg 37704135  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 37430374 - 37430224
Alignment:
Q  48 tgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttcctcttttt 147  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||| |||| | | ||||||||   |||||||||||||    
T  37430374 tgcaagcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctcttttt 37430275  T
Q  148 atttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
     ||||| ||  ||||| |||||||  || ||| |||| |||||||||||||    
T  37430274 ctttcaagacagaatcttggaaaaccggcacagattgctgcgagtgggatg 37430224  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 37391437 - 37391548
Alignment:
Q  1 tcatgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgt 100  Q
    |||||||| |||||||||||||||||||||| || |||  |||||| ||||||| |||||| || ||||| ||| |||||||||| ||||||||| ||||    
T  37391437 tcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgt 37391536  T
Q  101 caacacttcatc 112  Q
    ||||||||||||    
T  37391537 caacacttcatc 37391548  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 37595991 - 37595876
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| || ||||||||||||||||||| ||||||| |||||| |||||| | |||||||  ||||| |||||||||||||| ||||| |||  ||||||    
T  37595991 tgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaa 37595892  T
Q  104 cacttcatctgaaccc 119  Q
    |||||||||| |||||    
T  37595891 cacttcatctcaaccc 37595876  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 37380822 - 37381022
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| ||||||||||||||||||||||  |||||| |||||| |||||||| ||||| |  ||||| |||||||| ||||| |||||||||  | ||||    
T  37380822 tgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattttctttcaa 37380921  T
Q  104 cacttcatctgaacccgata------tttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggat 197  Q
    |||||||||  || ||||||      ||||| |||  |||||| |||||| ||||| ||| ||||| |||||||||  |||| ||||||| | |||||||    
T  37380922 cacttcatcgaaatccgatatacatttttggcctagatgttccactttttctttcaagatagaatcttggaaaaataatacagattgttgtgggtgggat 37381021  T
Q  198 g 198  Q
    |    
T  37381022 g 37381022  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 37399302 - 37399410
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| ||||| |||||||||||||||| ||||||| |||| | ||||||||||||||||  ||||| |||||||||||||| || |||||| ||||  |    
T  37399302 tgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcattttttgttga 37399401  T
Q  104 cacttcatc 112  Q
    |||||||||    
T  37399402 cacttcatc 37399410  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 37411805 - 37411998
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    |||||||| || |||||||||||||||| ||||| | |||||| |||||| |||||||||| | ||| ||||||||||||||||||| | || |||||||    
T  37411805 tgttgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaa 37411904  T
Q  104 ---cacttcatctgaacccgatatttggtctatgtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgg 194  Q
       || ||||||| | |  ||||||||| |||  ||||||||||||| ||| |  |  || || |||||||||  |||| ||||||||||||||    
T  37411905 tggcatttcatctcagcatgatatttggcctagttgttcctctttttctttgaaaacagattcttggaaaaataatacagattgttgcgagtgg 37411998  T

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Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 37437361 - 37437247
Alignment:
Q  5 gttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaac 104  Q
    |||| ||||||||||||| |||||| |  |||||| |||||| ||||||||||||||||  ||||| || ||||||||||| ||||| ||| || |||||    
T  37437361 gttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaac 37437262  T
Q  105 acttcatctgaaccc 119  Q
    ||||||||| |||||    
T  37437261 acttcatctcaaccc 37437247  T

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Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 37713284 - 37713170
Alignment:
Q  5 gttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaac 104  Q
    |||| ||||||||||||||||||||||  |||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||||    
T  37713284 gttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaac 37713185  T
Q  105 acttcatctgaaccc 119  Q
    ||||||||| |||||    
T  37713184 acttcatctcaaccc 37713170  T

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Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 37825574 - 37825460
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| ||||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  ||||||    
T  37825574 tgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaa 37825475  T
Q  104 cacttcatctgaacc 118  Q
    |||||||||| ||||    
T  37825474 cacttcatctaaacc 37825460  T

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Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 37534761 - 37534652
Alignment:
Q  4 tgttgctgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 103  Q
    ||||| ||||| |||||||||||||||| ||||||| |||| | |||||| | |||||||  ||||| |||||||||||||| ||||| |||  |||||     
T  37534761 tgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcag 37534662  T
Q  104 cacttcatct 113  Q
    ||||||||||    
T  37534661 cacttcatct 37534652  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 37441596 - 37441485
Alignment:
Q  13 tgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatc 112  Q
    ||||||||||||||||||| || |||| |||| | || ||| | |||||||  ||||| |||||||||||||| |||||  ||   ||||||||||||||    
T  37441596 tgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatc 37441499  T
Q  113 tgaacccgatattt 126  Q
      ||||||||||||    
T  37441498 gaaacccgatattt 37441485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 37391584 - 37391648
Alignment:
Q  134 gtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    |||||||||||||| ||||| ||  ||||| ||||||||  |||||||||||||| |||||||||    
T  37391584 gtgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatg 37391648  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 14554714 - 14554615
Alignment:
Q  10 tgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaacacttc 109  Q
    |||||||||||||||||||||| || |||| |||||| |||||||| |||||||  ||||| |||||||||||||| ||||| |||  ||||||||||||    
T  14554714 tgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacacttc 14554615  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 14554563 - 14554499
Alignment:
Q  134 gtgttcctctttttatttcaggatggaatcctggaaaaatggtacaaattgttgcgagtgggatg 198  Q
    ||||| |||||||| ||||| ||  ||||| ||||||||  ||||| ||||||||||||||||||    
T  14554563 gtgtttctctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatg 14554499  T

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