View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_3 (Length: 542)
Name: NF2594_low_3
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 29957933 - 29957418
Alignment:
| Q |
18 |
tttttatcataaatactttacatccatagatttactcatttgtgctagtttaatttagggcaaaacttacatgcatcttcttacacatttttcgtatgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29957933 |
tttttatcataaatactttacatccatagatttactcatttgtgctagtttaatttagagcaaaacttacatgcatcttcttacgcatttttcgtatgat |
29957834 |
T |
|
| Q |
118 |
ttttaactataaattcacttttggttgctaaaacaaactttaagaaaattttgaatttgtggtaatcataagtagtttagttaagaatcttagaaaatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29957833 |
ttttaactataaattcacttttggttgctaaaacaaactttaagaaaaaat-gaatttgtggtaatcataagtagtttagttaagaatcttagaaaatgt |
29957735 |
T |
|
| Q |
218 |
ttataagttttttcttttaacttatggaaaggaatttattttaacataaaagagagaaaagcatgactgctacataaaaggcatgtatataaaaggatag |
317 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
29957734 |
atataagtttttttttttaatttatggaaaggaatttattttaacataaaagagagaaaagcatgattgctacataaaaggtatgtatataaaaggatag |
29957635 |
T |
|
| Q |
318 |
aaaacatttgatgttgcctcgtaagaagtaaatttttaccataataagcgtcaaagaaagtacatagacttacacagtgagttgttgtaatgtatttatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29957634 |
aaaacatttgatgttgcctcgtaagaagtaaatttttaccatattaagcgtcaaagaaagtacatagacttacacagtgagttgttgtaatgtatttatg |
29957535 |
T |
|
| Q |
418 |
tgatccttgaacgttatcctttttgtctaaagcctgtgcactgaaatcaaagctaaaagacataatcactaaaagcttacctatccaactgcagccaaac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29957534 |
tgatccttgaacgttatcctttttgtctaaagcctgtgcactgaaatcaaagctaaaagacataatcactaaaagcttacctatccaactgcagccaaac |
29957435 |
T |
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| Q |
518 |
acagtacagcctttgct |
534 |
Q |
| |
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| T |
29957434 |
acagtacagcctttgct |
29957418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 19204174 - 19204079
Alignment:
| Q |
105 |
tttttcgtatgatttttaactataaattcacttttggttgctaaaacaaactttaagaaaattttgaatttgtggtaatcataagtagtttagtta |
200 |
Q |
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| T |
19204174 |
tttttcgtatgattcttgcctaaaaatacactttttgtgactataataaactttgagaaaattgtgaatttatgaaaatcatgagtagtttagtta |
19204079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 19206584 - 19206489
Alignment:
| Q |
105 |
tttttcgtatgatttttaactataaattcacttttggttgctaaaacaaactttaagaaaattttgaatttgtggtaatcataagtagtttagtta |
200 |
Q |
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| T |
19206584 |
tttttcgtatgattcttgcctaaaaatacactttttgtgactataataaactttgagaaaattgtgaatttatgaaaatcatgagtagtttagtta |
19206489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 23801171 - 23801228
Alignment:
| Q |
149 |
aacaaactttaagaaaattttgaatttgtggtaatcataagtagtttagttaagaatc |
206 |
Q |
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|||||| |||||||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
23801171 |
aacaaattttaagaaaattgtaaatttgaataaatcataagtagtttagttaagaatc |
23801228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 43150511 - 43150611
Alignment:
| Q |
106 |
ttttcgtatgatttttaactataaattcacttttggttgctaaaacaaactttaagaaaattttgaatttgtggtaatcataagtagtttagttaagaat |
205 |
Q |
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|||||||||| |||||||||| |||| || ||| | | || |||||||||| |||||||| |||||||| || ||||||| | ||||||||||||| |
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| T |
43150511 |
ttttcgtatggtttttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatagtgaatttagttaagaat |
43150610 |
T |
|
| Q |
206 |
c |
206 |
Q |
| |
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| |
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| T |
43150611 |
c |
43150611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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