View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2594_low_6 (Length: 428)

Name: NF2594_low_6
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2594_low_6
NF2594_low_6
[»] chr7 (22 HSPs)
chr7 (8-412)||(44010372-44010776)
chr7 (8-184)||(44016511-44016687)
chr7 (8-184)||(25351507-25351686)
chr7 (8-181)||(44143722-44143893)
chr7 (8-184)||(42006819-42006995)
chr7 (8-179)||(34546734-34546906)
chr7 (8-181)||(30247126-30247303)
chr7 (8-184)||(25357201-25357381)
chr7 (8-179)||(25410286-25410463)
chr7 (8-182)||(7464364-7464545)
chr7 (8-148)||(2121055-2121199)
chr7 (8-155)||(2075271-2075412)
chr7 (56-184)||(25405625-25405748)
chr7 (8-181)||(8378357-8378530)
chr7 (56-184)||(7070006-7070129)
chr7 (8-113)||(44512443-44512552)
chr7 (8-182)||(15540843-15541022)
chr7 (16-152)||(21369806-21369943)
chr7 (56-181)||(3319869-3319990)
chr7 (77-184)||(3324634-3324741)
chr7 (56-146)||(7075007-7075094)
chr7 (121-182)||(44512362-44512423)
[»] chr4 (21 HSPs)
chr4 (8-182)||(16688793-16688966)
chr4 (8-181)||(36771552-36771725)
chr4 (8-176)||(36769635-36769803)
chr4 (8-182)||(47566650-47566822)
chr4 (8-181)||(4555915-4556086)
chr4 (8-182)||(18587122-18587299)
chr4 (8-184)||(4558466-4558642)
chr4 (8-181)||(15317113-15317290)
chr4 (8-184)||(15312472-15312652)
chr4 (8-183)||(4570249-4570422)
chr4 (8-182)||(4885030-4885203)
chr4 (8-182)||(8529423-8529601)
chr4 (8-181)||(16489504-16489681)
chr4 (34-182)||(7050124-7050270)
chr4 (8-110)||(31300579-31300681)
chr4 (8-182)||(55822419-55822592)
chr4 (45-181)||(15831347-15831478)
chr4 (56-184)||(11853776-11853900)
chr4 (8-181)||(25613810-25613982)
chr4 (21-184)||(16631352-16631514)
chr4 (15-183)||(16638990-16639156)
[»] chr3 (27 HSPs)
chr3 (8-181)||(3330048-3330221)
chr3 (8-185)||(27761836-27762012)
chr3 (8-182)||(11079673-11079846)
chr3 (15-175)||(47878033-47878190)
chr3 (8-184)||(10897161-10897339)
chr3 (8-188)||(20031163-20031343)
chr3 (8-146)||(48390188-48390328)
chr3 (8-181)||(10594883-10595060)
chr3 (8-184)||(47882735-47882908)
chr3 (8-181)||(4535771-4535946)
chr3 (8-184)||(29913802-29913981)
chr3 (8-146)||(10949148-10949286)
chr3 (8-184)||(10612624-10612804)
chr3 (8-131)||(38003025-38003147)
chr3 (8-173)||(7418219-7418382)
chr3 (8-181)||(5858700-5858874)
chr3 (8-181)||(10200805-10200981)
chr3 (8-146)||(16462346-16462494)
chr3 (56-181)||(10093923-10094043)
chr3 (56-184)||(6303522-6303645)
chr3 (56-184)||(10099921-10100044)
chr3 (44-182)||(29897526-29897664)
chr3 (8-181)||(54193382-54193557)
chr3 (45-184)||(22625826-22625960)
chr3 (77-181)||(27544517-27544619)
chr3 (8-184)||(54188664-54188844)
chr3 (19-91)||(13893630-13893700)
[»] chr5 (17 HSPs)
chr5 (8-181)||(11962287-11962459)
chr5 (8-182)||(42238416-42238589)
chr5 (8-181)||(16093144-16093318)
chr5 (8-181)||(22672990-22673163)
chr5 (8-175)||(17841110-17841275)
chr5 (8-184)||(28786560-28786733)
chr5 (51-191)||(20437119-20437259)
chr5 (8-181)||(1240584-1240760)
chr5 (8-184)||(10627522-10627698)
chr5 (8-155)||(25452651-25452798)
chr5 (8-183)||(40222921-40223099)
chr5 (8-155)||(25445652-25445799)
chr5 (8-182)||(35385302-35385478)
chr5 (8-181)||(1170966-1171142)
chr5 (8-184)||(31782308-31782481)
chr5 (45-181)||(2297849-2297979)
chr5 (15-91)||(26406409-26406485)
[»] chr1 (10 HSPs)
chr1 (8-175)||(4144543-4144709)
chr1 (8-182)||(25134227-25134400)
chr1 (15-183)||(21353195-21353367)
chr1 (8-182)||(2393132-2393309)
chr1 (8-184)||(2401071-2401247)
chr1 (56-184)||(9521936-9522059)
chr1 (8-183)||(9526622-9526798)
chr1 (8-184)||(3090957-3091131)
chr1 (77-181)||(2232822-2232926)
chr1 (9-91)||(14997199-14997281)
[»] chr8 (20 HSPs)
chr8 (8-182)||(17799277-17799450)
chr8 (9-181)||(3276455-3276626)
chr8 (8-155)||(21034025-21034173)
chr8 (8-181)||(23179410-23179587)
chr8 (9-181)||(26268084-26268256)
chr8 (8-183)||(9020955-9021133)
chr8 (8-171)||(33032810-33032973)
chr8 (8-184)||(28890921-28891098)
chr8 (8-183)||(28895658-28895834)
chr8 (5-181)||(590947-591126)
chr8 (56-178)||(4812336-4812453)
chr8 (45-184)||(16757107-16757242)
chr8 (8-181)||(25684798-25684972)
chr8 (8-91)||(30423371-30423453)
chr8 (8-181)||(16752374-16752550)
chr8 (77-184)||(28328135-28328242)
chr8 (77-181)||(28332858-28332962)
chr8 (81-181)||(29554705-29554803)
chr8 (108-184)||(4823548-4823622)
chr8 (16-48)||(3005616-3005648)
[»] chr6 (22 HSPs)
chr6 (8-172)||(12166007-12166172)
chr6 (39-182)||(19701756-19701898)
chr6 (15-181)||(13467318-13467486)
chr6 (8-184)||(25941825-25942003)
chr6 (8-181)||(3577338-3577516)
chr6 (8-184)||(17694698-17694878)
chr6 (17-146)||(26643339-26643468)
chr6 (17-146)||(26749305-26749434)
chr6 (8-182)||(33215983-33216160)
chr6 (8-181)||(25465754-25465925)
chr6 (8-182)||(22342651-22342827)
chr6 (8-181)||(13883630-13883806)
chr6 (19-184)||(22351701-22351868)
chr6 (56-181)||(31248544-31248664)
chr6 (8-155)||(17038390-17038541)
chr6 (8-179)||(17066008-17066179)
chr6 (45-184)||(13878938-13879073)
chr6 (56-182)||(35201156-35201276)
chr6 (8-182)||(26887076-26887253)
chr6 (77-182)||(16786162-16786265)
chr6 (103-184)||(5165690-5165771)
chr6 (56-146)||(30987389-30987475)
[»] chr2 (18 HSPs)
chr2 (26-183)||(37170605-37170761)
chr2 (8-184)||(20054607-20054791)
chr2 (8-190)||(27517482-27517665)
chr2 (8-181)||(20049866-20050047)
chr2 (8-184)||(22717080-22717264)
chr2 (8-182)||(38191168-38191346)
chr2 (8-181)||(17943691-17943867)
chr2 (8-184)||(2736360-2736539)
chr2 (8-179)||(12781075-12781247)
chr2 (8-181)||(22712374-22712555)
chr2 (8-179)||(30479150-30479322)
chr2 (8-170)||(2741096-2741261)
chr2 (8-181)||(33670817-33670993)
chr2 (8-184)||(45679878-45680057)
chr2 (8-184)||(39680200-39680380)
chr2 (58-181)||(39687201-39687321)
chr2 (77-182)||(17462664-17462768)
chr2 (8-93)||(28458770-28458854)
[»] scaffold0131 (1 HSPs)
scaffold0131 (56-181)||(17704-17824)
[»] scaffold0006 (1 HSPs)
scaffold0006 (51-181)||(231321-231445)
[»] scaffold1050 (1 HSPs)
scaffold1050 (77-182)||(2918-3022)
[»] scaffold0256 (1 HSPs)
scaffold0256 (8-155)||(16481-16632)
[»] scaffold0209 (2 HSPs)
scaffold0209 (103-184)||(16882-16962)
scaffold0209 (8-47)||(16973-17012)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 44010776 - 44010372
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44010776 catcattagaccgaacttggtaaacaaattattgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgcttgat 44010677  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaaatagataattgtctgattg 207  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||  ||| |||||||||||||||||||||||||| ||||||||||    
T  44010676 ttgattacttgatattaatttgctccatgcatcaaatttattattggtgtagttttcagaacgaattcacaacaattttaaatagataactgtctgattg 44010577  T
Q  208 cttaaacatagggaattcaatttgtgtatatcgagttaaatttacaaactattatcattagatatgaaagtgtgacattcactaacttaccatcacccta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44010576 cttaaacatagggaattcaatttgtgtatatcgagttaaatttacaaactattatcattagatatgaaagtgtgacattcactaacttaccatcacccta 44010477  T
Q  308 attatatcttatctttctagcaaatttactttgaagttgacattctctctatccttgagttgatactacaaattgatgaagaatcccaaatcttttggtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44010476 attatatcttatctttctagcaaatttactttgaagttgacattctctctacccttgagttgatactacaaattgatgaagaatcccaaatcttttggtt 44010377  T
Q  408 cgtgg 412  Q
    |||||    
T  44010376 cgtgg 44010372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 44016687 - 44016511
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||    
T  44016687 catcattagaccgaattgggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgttttaattatttgctatccacttgat 44016588  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  44016587 ttgattacttggtattaatttgctccacgcatcaagtttattattggtgtggttttcacaacgaattcacaacaatt 44016511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 25351507 - 25351686
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  25351507 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgct 25351606  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  25351607 tgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 25351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 44143893 - 44143722
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||| | | |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  44143893 catcattagaccgaattggataaacaaattcttgcgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccgcttgat 44143794  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||| |||||||||||| |||||||||||||  |||||||| | |||||| |||| ||||| |||||    
T  44143793 ttgattacttggtattaatttgctccatgcatcaagtt--ttattggtgtggttttcacaacgaattcgcaaca 44143722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 42006819 - 42006995
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| ||||||||||  |||||||||||| ||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||  || |||||    
T  42006819 catcattagaccgaactgcgtaaacaaattcatgtattctccttcttccttttatttcttactgtttacttttgtttgaattatttgatactcgcttgat 42006918  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||| |||| |||||| | || ||||||||||||||    
T  42006919 ttgattactttgtattaatttgcttcacgcatcaagtttattatttgtatggttttcactacgaattcacaacaatt 42006995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 34546906 - 34546734
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| |||||||||||||||||||||| |||  ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||| ||    
T  34546906 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttccttttacctcttgctgtttatttttgtttggattatttgctacccgctt 34546807  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 179  Q
     |||||||||||||||||||||||| | || ||||||||||  |||||||| | |||||| ||||||||||||||    
T  34546806 aatttgattacttgatattaatttgttccacgcatcaagtt--ttattggtgtggttttctcaacaaattcacaa 34546734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 30247126 - 30247303
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttct----tccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| ||||| |||| |||||||||||| ||||||||| | |||    |||||||||||||||| ||||| ||||||||| ||||||||||| ||| |    
T  30247126 catcattagaccaaactgggtaaacaaattattgtgttctttctctcccttccttttatctcttgccgtttatttttgtttggattatttgctacccgct 30247225  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||||||| |||||||||||| |  ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  30247226 tgatttgattacttggtattaatttgctccgcgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 30247303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 25357201 - 25357381
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgt----tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| |||||||||||||||||||    ||||| |||||||| |||||||||||||||  |||| |||  ||||||||||| ||| |    
T  25357201 catcattagaccgaactgggtaaacaaattcttgtgtcctttctctctcttccttctatctcttgctgttttattttcttttgattatttgctacccgct 25357300  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||||||||||||| |||||| ||  |||||||||| |||||||| | |||||| |||| |||| |||||||||    
T  25357301 tgatttgattacttgatattattttgctccacacatcaagtttgttattggtgtggttttctcaacgaattgacaacaatt 25357381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 25410286 - 25410463
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgt------tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccg 101  Q
    |||||| |||||||||| |||||||||||||||||||      ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| |||    
T  25410286 catcattagaccgaactgggtaaacaaattcttgtgtcctttctctctctcttccttctatctcttgctgttttattttgtttggattatttgctacccg 25410385  T
Q  102 tttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 179  Q
     |||||||||||||||||||||| ||||||  |  |||||||||| ||||| || |  ||||| ||||||||||||||    
T  25410386 cttgatttgattacttgatattattttgctcaacacatcaagtttgttattagtgtgattttctcaacaaattcacaa 25410463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 7464545 - 7464364
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgttt-----gaattatttgctatc 99  Q
    |||||| |||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||  |||| |||     | |||| |||||| |    
T  7464545 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgttttttttttttttttttggattaattgctacc 7464446  T
Q  100 cgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    || |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  7464445 cgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 7464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 2121055 - 2121199
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttc-tctt--tcttccttttatctcttgctgttt-acttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||| | ||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| |||| |||||||||  |    
T  2121055 catcattagaccgaattgggtaaacaaattcttgtgttcatcttcttcttccttttatctcttgctgttttacttttgtttggattaattgctatccact 2121154  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttat 148  Q
    |||||||||| |||| |||||||||||| ||  ||||||||||||    
T  2121155 tgatttgattgcttggtattaatttgctccacacatcaagtttat 2121199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 2075271 - 2075412
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||| |||||  |||||||||| |||    ||||||| ||||||||||| ||| ||| |    
T  2075271 catcattagaccgaactgggtaaacaaattcttgtgttctccttcctcctt--atctcttgctattt----ttgtttggattatttgctacccgcttgtt 2075364  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    ||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  2075365 ttgattacttggtattaatttgctccacgcatcaagttttttattggt 2075412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 25405625 - 25405748
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  25405625 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 25405719  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| |||| ||||||||||||||    
T  25405720 gtggttttctcaacgaattcacaacaatt 25405748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 8378530 - 8378357
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||     |||||| ||||||||||| ||    
T  8378530 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttgctgttt-----tgtttggattatttgctaccc 8378436  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    | || ||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||    
T  8378435 gcttaatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtctggttttctcaacgaattcacaaca 8378357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 7070006 - 7070129
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||  ||||||||    
T  7070006 cttttatctcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggt 7070100  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| | || ||||||||||||||    
T  7070101 gtggttttctctacgaattcacaacaatt 7070129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 44512552 - 44512443
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgtt---ctctttcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||   ||  |||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |    
T  44512552 catcattagaccgaactgggtaaacaaattcttgtgttattcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctacccgct 44512453  T
Q  104 tgatttgatt 113  Q
    || |||||||    
T  44512452 tgctttgatt 44512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 15541022 - 15540843
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttct-------tc-cttttatctcttgctgtttacttttgtttgaattatttgctat 98  Q
    |||||| |||||||||| ||||||||||| ||||||||||| |||||       || |||||||| ||||||||||    ||||||| ||||||||||||    
T  15541022 catcattagaccgaactgggtaaacaaatatcttgtgttctttttctctctctctctcttttatcgcttgctgttt----ttgtttggattatttgctat 15540927  T
Q  99 ccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaacaa 182  Q
    ||| ||| |||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| ||||||||||||    
T  15540926 ccgcttgttttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaa 15540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 21369806 - 21369943
Alignment:
Q  16 gaccgaacttggtaaacaaatt-cttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttgatttgatt 113  Q
    ||||||||| ||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |||| ||||||||||||  | | ||| |||||||||||    
T  21369806 gaccgaactgggtaaacaattttcttgtggtctccttcatccttt-atctcttgctgtttatttttatttgaattattttgtcacccgcttgatttgatt 21369904  T
Q  114 acttgatattaatttgcttcatgcatcaagtttattatt 152  Q
    ||||  |||||||||||| || ||||||| |||||||||    
T  21369905 acttagtattaatttgctccacgcatcaaatttattatt 21369943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 3319990 - 3319869
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  3319990 cttttatctcttgctgttt----ttgtttggattaattgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 3319896  T
Q  156 atag-ttttcgcaacaaattcacaaca 181  Q
     | | ||||| |||| |||||||||||    
T  3319895 gtggtttttctcaacgaattcacaaca 3319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 3324741 - 3324634
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 175  Q
    ||||||||| |||| |||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  3324741 ttttgtttgcattaattgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 3324643  T
Q  176 acaacaatt 184  Q
    |||||||||    
T  3324642 acaacaatt 3324634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 7075007 - 7075094
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagttt 146  Q
    |||||||||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| ||||||||| || || |||||||||||    
T  7075007 cttttatctcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaattttctccacgcatcaagttt 7075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 44512423 - 44512362
Alignment:
Q  121 attaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| || ||||||||||| |||||||| |  ||||| |||| ||||||||||||    
T  44512423 attaatttgctccacgcatcaagttttttattggtgtgtttttctcaacgaattcacaacaa 44512362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 16688966 - 16688793
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  16688966 catcattagaccgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgat 16688867  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    | |||||||||||||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  16688866 tcgattacttgatattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 16688793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 36771552 - 36771725
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  36771552 catcattagaccgaactaggtaaacaaattcttgtgttctccttcttccttttatctcttgccgtttacttttgtttgaattatttgctacccgcttgat 36771651  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||| ||| ||||||||||||  | |||||||||||||||||| | | |||||| ||||||||||||||||    
T  36771652 ttgattatttggtattaatttgctcaacgcatcaagtttattattgttgtggttttcacaacaaattcacaaca 36771725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 36769635 - 36769803
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||| ||  |||||    
T  36769635 catcattagaccgaactggataaacaaattcttgtgttctccttcttccttttatctcttgtcgtttgcttttgtttgaattatttgctacccacttgat 36769734  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 176  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| |||| ||||||    
T  36769735 ttgattacttgatattaatttgcttcacgcatcaagtttattattggtgtggttttcacaacgaattca 36769803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 47566650 - 47566822
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||  |||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||    
T  47566650 catcattagaccgaac--ggtaaacaaattcttgagttctccttcttccttttatctcttgttgttttcttttgtttgaattatttgatatccgcttgat 47566747  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||| |||  ||||||||||||    
T  47566748 ttgattacttggtattaatttgctccatgcatcaagtttattattggtgtggttttctcaaagaattcacaacaa 47566822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 4556086 - 4555915
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||    
T  4556086 catcattaaaccgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttggattaattgctacccgcttgat 4555987  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||| ||| |||||||||||| || ||||||| ||  |||||||| | |||||| ||||||||||||||||    
T  4555986 ttgattatttggtattaatttgctccacgcatcaaatt--ttattggtgtggttttctcaacaaattcacaaca 4555915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 18587122 - 18587299
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |    
T  18587122 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttatttttgtttgaattatttgctacccgct 18587221  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  18587222 tgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 18587299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 4558466 - 4558642
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||| ||||||||  || ||||||||||||||||||||| | |||||||||||||||||| || ||| |||||    
T  4558466 catcattagaccgaactgggtaaacaaattcatgtgttcttctttttccttttatctcttgctgttaatttttgtttgaattatttgatacccgcttgat 4558565  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||| || ||||||||| || |||||||||||||||||||| | |||||| |||| ||||||||||||||    
T  4558566 ttgattacttggtaataatttgctccacgcatcaagtttattattggtgtggttttctcaacgaattcacaacaatt 4558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 15317113 - 15317290
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  15317113 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgct 15317212  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||| ||||||||| |||| ||||||| |||||||||||||| |||||||| | |||||| |||| |||||||||||    
T  15317213 tgattggattacttggtattcatttgctccatgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 15317290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 15312472 - 15312652
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtg----ttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||  ||    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  15312472 catcattagaccgaactaggtaaacaaattctcatgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgct 15312571  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  15312572 tgatttgattacttggtattaatttgctccacgcatcaagttttttattggtgtggttttctcaacgaattcacaacaatt 15312652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 4570249 - 4570422
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| ||||||||||  |||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  4570249 catcattagaccgaactgtgtaaacaaattcttgtgttcttcttcttccttttatctcttgttgtttactattgtttgaattatttgctacccgcttgat 4570348  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    ||||||||||| |||||||||||| || ||||||||||  |||||||| | ||||||  ||| |||||||||||||    
T  4570349 ttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcaaaacgaattcacaacaat 4570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 4885030 - 4885203
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||| || ||| |||||    
T  4885030 catcattagaccgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgttatttacctttgtttggattatttgttacccgcttgat 4885129  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| |||||||||||| || ||||||||||| |||||||| |  ||||  |||| ||||||||||||    
T  4885130 ttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtgatttttacaacgaattcacaacaa 4885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 8529423 - 8529601
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgt 102  Q
    |||||| |||||||||| ||||||||||||||||||||||    || |||||||||||||||||||||||||||||||||| | | ||||||||| |||     
T  8529423 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgttttggactatttgctacccgc 8529522  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||||||    
T  8529523 ttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaa 8529601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 16489504 - 16489681
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttc----tctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgt 102  Q
    |||||| |||||||||| |||||||||||| ||||||||    ||| |||| ||||||||||||||||||||||||||||| | ||||||||||| |||     
T  16489504 catcattagaccgaactaggtaaacaaattattgtgttcgttctctctcttacttttatctcttgctgtttacttttgttttggattatttgctacccgc 16489603  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||||||||||||||||||||| ||  |||||||||| |||||||| | |||||| |||| |||||||||||    
T  16489604 ttgatttgattacttgatattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 16489681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 7050270 - 7050124
Alignment:
Q  34 aattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttc 133  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||| ||||| |||||||||||| |    
T  7050270 aattcttgtgttctccttctttcttttatctcttgctgtttaattttgtttgaattatatgctacccgcttgatttgataacttggtattaatttgctcc 7050171  T
Q  134 atgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    | ||||||||||  |||||||| | |||||| |||| ||||||||||||    
T  7050170 acgcatcaagtt--ttattggtgtggttttcacaacgaattcacaacaa 7050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 31300579 - 31300681
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  31300579 catcattagaccgaactgggtaaacaaattattgtgttctctttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgat 31300678  T
Q  108 ttg 110  Q
    |||    
T  31300679 ttg 31300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 55822419 - 55822592
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgtt--ctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| ||||||||||| |||||||||  |||| |||  |||||||||||||||||||   |||||||| |||| |||||| |||  |    
T  55822419 catcattagaccgaactgggtaaacaaatatcttgtgttttctctctctctcttttatctcttgctgttt---tttgtttggattaattgctacccgcct 55822515  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||||||||||||||||||| ||  |||||||||| ||||||||||||||||| |||| ||||||||||||    
T  55822516 gatttgattacttgatattaatttgctccacacatcaagttt-ttattggtatagttttctcaacgaattcacaacaa 55822592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 15831347 - 15831478
Alignment:
Q  45 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 144  Q
    ||||| |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  15831347 tctctctctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 15831442  T
Q  145 ttattattggtatagttttcgcaacaaattcacaaca 181  Q
    || |||||||| | |||||| |||| |||||||||||    
T  15831443 tt-ttattggtgtggttttctcaacgaattcacaaca 15831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 11853776 - 11853900
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| ||||||||||| |||| |||||||||||| ||  |||||||||| ||||||||    
T  11853776 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattgcttggtattaatttgctccacccatcaagttttttattggt 11853871  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| |||| ||||||||||||||    
T  11853872 gtggttttctcaacgaattcacaacaatt 11853900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 25613982 - 25613810
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttga 106  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||| |||  |||||||||||| |||| |||||||||||||||||  | | | | ||||    
T  25613982 catcattagaccgaactaggtaaacaaattcttgtgttctccttcctcc-attatctcttgctatttatttttgtttgaattattttttcacctgcttga 25613884  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||||  ||| | ||||||||||  |  |||||||||| |||||||| | ||||| ||||| |||||| ||||    
T  25613883 tttgattgtttggttttaatttgctcaacacatcaagttttttattggtgt-gtttttgcaacgaattcataaca 25613810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 16631352 - 16631514
Alignment:
Q  21 aacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttta--cttttgtttgaattat-ttgctatccgtttgatttgattactt 117  Q
    |||| ||||| |||||  ||||||| || |||||||||| |||||||| ||||||  |||||| ||||||||| |||| | ||| ||||||||||| |||    
T  16631352 aactgggtaatcaaatcattgtgttatccttcttccttt-atctcttgttgtttatgcttttgcttgaattatattgccacccgcttgatttgatttctt 16631450  T
Q  118 gatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    | | ||| |||||| |||| ||||||||| |||||||| | ||||| ||||||||||||||||||||    
T  16631451 ggtttta-tttgctccatggatcaagttt-ttattggttt-gtttttgcaacaaattcacaacaatt 16631514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 16638990 - 16639156
Alignment:
Q  15 agaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttta-cttttgtttgaattat-ttgctatccgtttgatttgat 112  Q
    |||| ||||| ||||||||||| |||||| | || || ||||||| |||||||||||||||  ||||| ||| ||||| ||||  |||| ||||||||||    
T  16638990 agactgaactgggtaaacaaatccttgtgatatccttattccttt-atctcttgctgtttattttttgcttggattatattgccttccgcttgatttgat 16639088  T
Q  113 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    | |||| | || ||||||| ||  |||||||||| |||||||||| ||||| ||||  |||||||||||||    
T  16639089 tgcttggt-tttatttgctccacacatcaagttt-ttattggtat-gtttttgcaaagaattcacaacaat 16639156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 3330048 - 3330221
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  3330048 catcattagaccgaactgggtacacaaattcttgtgttctccttcttccttttatctcttgctgtttacttttgtttgagttatttgctatccgcttgat 3330147  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||| |||||||||||| |  ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  3330148 ttgattacttggtattaatttgctccgcgcatcaagtttgttattggtgtggttttcacaacgaattcacaaca 3330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 27762012 - 27761836
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  27762012 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccgcttgat 27761913  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattt 185  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||| |  ||||| |||| |||| ||||||||||    
T  27761912 ttgattagttgatattaatttgctccatgcatcaagttt-ttattggtgtgtttttcacaacgaatttacaacaattt 27761836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 11079673 - 11079846
Alignment:
Q  8 catcatcagaccgaactt-ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttga 106  Q
    |||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||    
T  11079673 catcattagaccgaaattaggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccacttga 11079772  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    |||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| ||||||||||||    
T  11079773 tttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattcacaacaa 11079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 47878190 - 47878033
Alignment:
Q  15 agaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgatta 114  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  47878190 agaccgaactgggtaaacaaattcttgtgttctcattcttccttttatctcttgctgtttacttttgtttgaattatttgctacccacttgatttgatta 47878091  T
Q  115 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 175  Q
    |||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||    
T  47878090 cttg-tattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattc 47878033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 10897161 - 10897339
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||    
T  10897161 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgctt 10897260  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||| |||||||||| | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  10897261 gatttgattacttggtattaatttgttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 10897339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 20031343 - 20031163
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||| |||||| |||| ||| |||||    
T  20031343 catcattaaaccgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgttcgtttttgtttggattattcgctacccgcttgat 20031244  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaa 188  Q
    ||||||||||| ||||||||||||  | |||||| |||| |||||||| | |||||| |||| ||||||||||||| ||||    
T  20031243 ttgattacttggtattaatttgctctacgcatcatgttttttattggtgtggttttcacaacgaattcacaacaatattaa 20031163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 48390328 - 48390188
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttcc--ttttatctcttgctgtttacttttgtttgaattatttgctatccgtttg 105  Q
    |||||| | |||||||| ||||||||||||||||||||||| |||||||  ||||||||||||||||||  |||||||||||||||||| || |||||||    
T  48390328 catcattaaaccgaactgggtaaacaaattcttgtgttctccttcttccctttttatctcttgctgtttgtttttgtttgaattatttgttacccgtttg 48390229  T
Q  106 atttgattacttgatattaatttgcttcatgcatcaagttt 146  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  48390228 atttgattacttgatattaatttgctccacgcatcaagttt 48390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 10595060 - 10594883
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgt 102  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||| |||| ||||||||||| |||     
T  10595060 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgttttggattatttgctacccgc 10594961  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||||||||||||| ||||||||| || || | ||||||||| |||||||| | |||||| |||| |||||||||||    
T  10594960 ttgatttgattacttggtattaatttactccacgtatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 10594883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 47882908 - 47882735
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| ||| |||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||  |||||    
T  47882908 catcattagatcgaactgggtaaacaaattcttgtgttccctt-ctttcttttatctcttgctgtttacttttgtttgaattatttactacccacttgat 47882810  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||| ||| |||||||||||| || ||||||||||  |||||||| | |||||| |||  ||||||||||||||    
T  47882809 ttgattaattggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaatgaattcacaacaatt 47882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 4535771 - 4535946
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtt---tacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||||| ||||||||||| ||  ||    
T  4535771 catcattagaccgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgttcgttttttttgtttggattatttgctacccactt 4535870  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||||||||||| |||||||||||| || |||| || ||| |||||||| | |||||  |||| |||||||||||    
T  4535871 gatttgattacttggtattaatttgctccacgcattaaattt-ttattggtctggtttttacaacgaattcacaaca 4535946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 29913981 - 29913802
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    ||||||||  | |||||||||||||||  ||||||||| ||||||||||| ||| |    
T  29913981 catcattagaccgaactgggtaaacaaattcttgtgttctttctctttcttctctctatctcttgctgttttattttgtttggattatttgctacccgct 29913882  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||||||| ||||||| |||| ||  |||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  29913881 tgatttgattacttggtattaatctgctccacacatcaagtttgttattggtgtggttttctcaac-aattcacaacaatt 29913802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 10949286 - 10949148
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||   | |||||    
T  10949286 catcattagactgaactggataaacaaattcttgtgttctccttcttccttttatctcttgctgttagtttttgtttgaattatttgctacgagcttgat 10949187  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagttt 146  Q
    ||||||||||| |||||||||||| || |||||||||||    
T  10949186 ttgattacttggtattaatttgctccacgcatcaagttt 10949148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 10612804 - 10612624
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgtt----ctctttcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgt 102  Q
    |||||| |||||||||| ||||||||||||||||||||    |||| |||||||||||||||||||| |||||||||| |||| |||||||||||  ||     
T  10612804 catcattagaccgaactgggtaaacaaattcttgtgttctctctctctcttccttttatctcttgctatttacttttgttttggattatttgctactcgc 10612705  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||||  || |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||| |||||||    
T  10612704 ttgatttgattatctggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcataacaatt 10612624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 38003025 - 38003147
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||  || ||    
T  38003025 catcattagaccgaactgcgtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgttt-aattatttgctacccactttat 38003123  T
Q  108 ttgattacttgatattaatttgct 131  Q
    ||||||||||| ||||||||||||    
T  38003124 ttgattacttggtattaatttgct 38003147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 7418219 - 7418382
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgct-atccgtttga 106  Q
    |||||| |||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||| ||||||||||| |||||  | | ||| ||||    
T  7418219 catcattagaccgaactgggtaaacaaatccttgtgttctc---cttccttttatatcttgctgtttatttttgtttgaaatattttgtcacccgcttga 7418315  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaat 173  Q
    |||||||||||  |||||||||| | || |||||||||||||||||||| | |||||| ||||||||    
T  7418316 tttgattactttgtattaatttgttccacgcatcaagtttattattggtgtggttttcacaacaaat 7418382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 5858700 - 5858874
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttc----ttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||    ||||||||||||||||||||||  ||||||| || |||||||||| ||| |    
T  5858700 catcattagaccgaact-ggtaaacaaattcttgtgttctttctccctcttccttttatctcttgctgttttattttgttgga-ttatttgctacccgct 5858797  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaa-caaattcacaaca 181  Q
    ||||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| ||| | |||||||||||    
T  5858798 tgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaatcgaattcacaaca 5858874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 10200981 - 10200805
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgtt-------ctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatc 99  Q
    |||||| |||||||||| ||||||||||| |||||||||       |||| |||  |||||||||||||||||||    ||||||| ||||||||||| |    
T  10200981 catcattagaccgaactgggtaaacaaatatcttgtgtttttctctctctctctctcttttatctcttgctgttt----ttgtttggattatttgctacc 10200886  T
Q  100 cgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    || |||||||||||||||| |||||||||||| |||||||||||||| |||||||| | |||||| |||| |||||||||||    
T  10200885 cgcttgatttgattacttggtattaatttgctccatgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 10200805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 16462346 - 16462494
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgcta 97  Q
    |||||| |||||||||| ||||||||||||||||||||||          || ||||||||||||||||||||||||| ||||||||| |||| ||| ||    
T  16462346 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctctctctcttccttttatctcttgctgtttatttttgtttggattaattgata 16462445  T
Q  98 tccgtttgatttgattacttgatattaatttgcttcatgcatcaagttt 146  Q
     ||| |||||||||||||||| |||||||||||| || |||||||||||    
T  16462446 cccgcttgatttgattacttggtattaatttgctccacgcatcaagttt 16462494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 10094043 - 10093923
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  10094043 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccatgcatcaagttt-ttattggt 10093949  T
Q  156 atagttttcgcaacaaattcacaaca 181  Q
     | |||||| |||| |||||||||||    
T  10093948 gtggttttctcaacgaattcacaaca 10093923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 6303522 - 6303645
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  6303522 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 6303616  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| |||| ||||||||||||||    
T  6303617 gtggttttctcaacgaattcacaacaatt 6303645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 10100044 - 10099921
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  10100044 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 10099950  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| |||| ||||||||||||||    
T  10099949 gtggttttctcaacgaattcacaacaatt 10099921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 29897664 - 29897526
Alignment:
Q  44 ttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaag 143  Q
    ||||||||||||  | ||||| |||||||||  ||||||||| ||||||||||| ||| |||||||||||| ||| ||||||| |||| ||  |||||||    
T  29897664 ttctctttcttctctctatctgttgctgttttattttgtttggattatttgctacccgcttgatttgattatttggtattaatctgctccacacatcaag 29897565  T
Q  144 tttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||| |||||||| | |||||| |||| ||||||||||||    
T  29897564 tttgttattggtgtggttttctcaacgaattcacaacaa 29897526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 54193382 - 54193557
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||    ||||||| ||||||||||| ||    
T  54193382 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttgctgttt----ttgtttggattatttgctaccc 54193477  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgc-aacaaattcacaaca 181  Q
    | ||| |||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| | ||| |||||||||||    
T  54193478 gcttggtttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaaacgaattcacaaca 54193557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 22625960 - 22625826
Alignment:
Q  45 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 144  Q
    ||||| |||||||||||||||||| |||||    ||||||| ||||||||||| ||| ||  |||||||||||| |||||||||||| ||  ||||||||    
T  22625960 tctctctcttccttttatctcttgttgttt----ttgtttggattatttgctacccgcttcttttgattacttggtattaatttgctccacacatcaagt 22625865  T
Q  145 ttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    || |||||||| | |||||| |||| ||||||||||||||    
T  22625864 tt-ttattggtgtggttttctcaacgaattcacaacaatt 22625826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 27544517 - 27544619
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 176  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||  | ||||||||||  |||||||| | |||||| |||| ||||||    
T  27544517 ttttgtttggattatttgctacccgcttgatttgattacttgatattaatttgctcaacgcatcaagtt--ttattggtgtggttttctcaacgaattca 27544614  T
Q  177 caaca 181  Q
    |||||    
T  27544615 caaca 27544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 54188664 - 54188844
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct--------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctat 98  Q
    |||||| |||||||||| ||||||||||| |||||||||||        || |||||||||||||||||| |||||    ||||||| |||||||||||     
T  54188664 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctcttccttttatctcttgttgttt----ttgtttggattatttgctac 54188759  T
Q  99 ccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgc-aacaaattcacaacaatt 184  Q
    ||| ||| |||||||||||| |||||||||||| || ||||||| ||  |||||||| | |||||| | ||| ||||||||||||||    
T  54188760 ccgcttggtttgattacttggtattaatttgctccacgcatcaaatt--ttattggtgtggttttctcaaacgaattcacaacaatt 54188844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 13893630 - 13893700
Alignment:
Q  19 cgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 91  Q
    |||||| |||||||| |||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||    
T  13893630 cgaactgggtaaacatattcttgtgttctccttcttcc-tttatctcctgctgttta-ttttgtttgaattat 13893700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 11962459 - 11962287
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  11962459 catcattagaccgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgat 11962360  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||  |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  11962359 ttgattacttagtattaatttgctaca-gcatcaagttttttattggtgtggttttcacaacgaattcacaaca 11962287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 42238416 - 42238589
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||    
T  42238416 catcattagaccgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgcttgat 42238515  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||  |||| ||||||||||||    
T  42238516 ttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttacaacgaattcacaacaa 42238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 16093318 - 16093144
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||    
T  16093318 catcattagaccgaactggataaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgttattcgcttgat 16093219  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaaca 181  Q
    ||||||||||| ||||||||| || || |||||||||||||||||||| | | ||||| |||| |||||||||||    
T  16093218 ttgattacttggtattaatttactccacgcatcaagtttattattggtgtggtttttcacaacgaattcacaaca 16093144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 22672990 - 22673163
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct--ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttg 105  Q
    |||||| |||||||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  22672990 catcattagaccgaactgggtaaacaaattcttgtgttctttctctcttccttttatctcttgctgtttatttttgtttgaattatttgctacccgcttg 22673089  T
Q  106 atttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||||| |||||||||||| || ||||||||||  |||||||| | ||||||  ||| |||||||||||    
T  22673090 atttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcttaacgaattcacaaca 22673163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 17841275 - 17841110
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || ||    
T  17841275 catcattagaccgaactgggtaaacaaattattgtgttctccttcttccttttatctcttgctatttatttttgtttgaattatttgctacccgcttaat 17841176  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 175  Q
    ||||||||| |||||||||||||  || ||||||||||  |||||||| |||||||| |||| |||||    
T  17841175 ttgattactcgatattaatttgccccacgcatcaagtt--ttattggtgtagttttcacaacgaattc 17841110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 28786560 - 28786733
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgtttga 106  Q
    |||||| |||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||    
T  28786560 catcattagaccgaactgggtaaacaaattcttgtgttctc---cttccttttatctcttgctgtttgctttttgtttgaattatttgctacccgcttga 28786656  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||| ||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||||| ||||    
T  28786657 tttgattatttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaataatt 28786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 20437119 - 20437259
Alignment:
Q  51 tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttatta 150  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  |  |||||||||||||     
T  20437119 tcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgatttgattacttgatattaatttgctcaacacatcaagtttattg 20437218  T
Q  151 ttggtatagttttcgcaacaaattcacaacaattttaaata 191  Q
    ||||| |  ||||| |||| ||||||||||| ||| |||||    
T  20437219 ttggtgtgattttcacaacgaattcacaacactttcaaata 20437259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 1240584 - 1240760
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgtt 103  Q
    |||||| | |||||||| |||||| ||||||||||||||| |||  |||||||||||||||||||| ||||||||||||| | ||||||||||| ||| |    
T  1240584 catcattaaaccgaactaggtaaataaattcttgtgttcttcttcttcttccttttatctcttgctatttacttttgttttggattatttgctacccgct 1240683  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||| | |||| |||||||||||    
T  1240684 tgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttcctcaacgaattcacaaca 1240760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 10627522 - 10627698
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttga 106  Q
    |||||| |||| ||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||| ||||||||||||||  |||  | ||| ||||    
T  10627522 catcattagactgaactgggtaaacagattcttgtgttctccttcttccttt-atctcttgttgtttatttttgtttgaattaaattgtcacccgcttga 10627620  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||| |||| | |||||||||| || |||||||||||||||||||| | |||||| |||  ||||||||||||||    
T  10627621 tttgattgcttggttttaatttgctccacgcatcaagtttattattggtgtggttttcacaatgaattcacaacaatt 10627698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 25452651 - 25452798
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||    ||||||| ||||||||||| ||| |    
T  25452651 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgttt----ttgtttggattatttgctacccgct 25452746  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    ||||||||||||||| |||||||||||| || ||||||||| | ||||||||    
T  25452747 tgatttgattacttggtattaatttgctccacgcatcaagtattttattggt 25452798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 40222921 - 40223099
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgt---ttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||   || |||||||||| ||||||||||| ||  ||    
T  40222921 catcattagaccgaactaggtaaacaaattattgtgttctctttcttccttttatctcttgttgttcattccttttgtttggattatttgctaccctctt 40223020  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaacaat 183  Q
    |||||||||||||| ||||||||| || || ||||||| ||| |||||||| | | ||||  |||| |||||||||||||    
T  40223021 gatttgattacttggtattaatttactccacgcatcaaattt-ttattggtgtggttttttacaacgaattcacaacaat 40223099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 25445652 - 25445799
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || |||||||||||||||||| |||||    ||||||| ||||||||||| ||| |    
T  25445652 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgatgttt----ttgtttggattatttgctacccgct 25445747  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    ||||||||||||||| |||||||||||| || ||||||||| | ||||||||    
T  25445748 tgatttgattacttggtattaatttgctccacgcatcaagtattttattggt 25445799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 35385478 - 35385302
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||    ||  ||||||||| ||||||||||| ||    
T  35385478 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttg----ttgattttgtttggattatttgctaccc 35385383  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    | |||||||||||||||| |||||||||||| || ||||||||||| |||||||| |||||||| |||  ||||||||||||    
T  35385382 gcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtagttttctcaatgaattcacaacaa 35385302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 1170966 - 1171142
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttct-------tccttttatctcttgctgtttacttttgtttgaattatttgctatc 99  Q
    |||||| |||||||||| ||||||||||| ||||||||||| | |||       ||||||||||||||||||     ||||||||| |||| |||||| |    
T  1170966 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctctccttttatctcttgctg----gttttgtttggattaattgctacc 1171061  T
Q  100 cgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    || ||| ||||||||||||||||||||||||| ||  |||||||||| |||||||| | |||||| |||| |||||||||||    
T  1171062 cgcttgttttgattacttgatattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 1171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 31782481 - 31782308
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctg-tttacttttgtttgaattat-ttgctatccgtttg 105  Q
    |||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||| |||||| |||| ||||||||||||||| |||  | ||| |||    
T  31782481 catcattagaccgaact-ggtaaacagattcttgtgttctccttctgccttttatctgttgctgttttatttttgtttgaattatattgtcacccgcttg 31782383  T
Q  106 atttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||| ||||   || || |||| ||  |||||||||  ||||||||||  |||| ||||||||||||||||||||    
T  31782382 atttgatttcttg--gtttatatgctccacacatcaagtt--ttattggtatgatttttgcaacaaattcacaacaatt 31782308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 2297979 - 2297849
Alignment:
Q  45 tctctttcttcctttt-atctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaag 143  Q
    ||||| |||||||||| ||||||||||||||     |||||| ||||||||||| ||| |||||||||||||||| ||||||||| || || ||||||||    
T  2297979 tctctctcttcctttttatctcttgctgttt-----tgtttggattatttgctacccgcttgatttgattacttggtattaatttactccacgcatcaag 2297885  T
Q  144 tttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||  || ||||| | |||||| |||| |||||||||||    
T  2297884 tt--ttgttggtgtggttttctcaacgaattcacaaca 2297849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 26406485 - 26406409
Alignment:
Q  15 agaccgaacttggtaaacaaattctt-gtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 91  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||||    
T  26406485 agaccgaactaggtaaacaaattctttgtgttctccttcttccttt-atctcttgctgtttatttttgcttgaattat 26406409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 4144709 - 4144543
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4144709 catcattagaccgaactgggtaaacaaattcttgtgttctccttcttccttt-atctcttgctgtttacttttgtttgaattatttgctatccgcttgat 4144611  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattc 175  Q
    ||||||||||| |||||||||||| || | |||||| ||||||||||| | |||||| |||| |||||    
T  4144610 ttgattacttggtattaatttgctccacgtatcaagattattattggtgtggttttcacaacgaattc 4144543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 25134227 - 25134400
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||||| ||| ||| |||||    
T  25134227 catcattagaccgaagtgggtaaacaaattcttgtgttctccttcttccttttatcttttgctgtttgtttttgtttgaattatttactacccgcttgat 25134326  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||| ||||||||||||| ||||| ||||||| ||| |||||||| | |||||| |||| ||||||||||||    
T  25134327 ttgattatttgatattaatttacttcacgcatcaaattt-ttattggtgtggttttcacaacgaattcacaacaa 25134400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 21353367 - 21353195
Alignment:
Q  15 agaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttg 110  Q
    |||||||||| ||||||||||||||||||||||    ||||||||||| |||||||||||||||  ||||||||| ||||||||||| ||  |||||||     
T  21353367 agaccgaactgggtaaacaaattcttgtgttctttctctttcttccttctatctcttgctgttttattttgtttggattatttgctacccacttgattta 21353268  T
Q  111 attacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    |||||||  |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||| ||||||    
T  21353267 attacttagtattaatttgctccacgcatcaagtttgttattggtgtggttttctcaacgaattcataacaat 21353195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 2393309 - 2393132
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccg 101  Q
    |||||| |||||||||| | ||||||||||||||||||||    |||  ||||||||||||||||||||||||||||| ||||| |||| |||||||||     
T  2393309 catcattagaccgaactggataaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttt-gtttggattaattgctatcca 2393211  T
Q  102 tttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
     |||||||||||||||| |||||||||||| || |||| |||||  |||||||| | |||||| |||| ||||||||||||    
T  2393210 cttgatttgattacttggtattaatttgctccacgcataaagtt--ttattggtgtggttttcacaacgaattcacaacaa 2393132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 2401247 - 2401071
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| |||||||||||||||||||||| |||  |||||||||||||||||| |||||||||| ||||| |||| ||| |||||  ||    
T  2401247 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgttgtttacttt-gtttggattaattgttatccactt 2401149  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||| ||||||||||||  | ||||||||||  ||||| || |  ||||| |||| ||||||||||||||    
T  2401148 gatttgattacttggtattaatttgctctacgcatcaagtt--ttatttgtgtgattttcacaacgaattcacaacaatt 2401071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 9521936 - 9522059
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  9521936 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 9522030  T
Q  156 atagttttcgcaacaaattcacaacaatt 184  Q
     | |||||| |||| ||||||||||||||    
T  9522031 gtggttttctcaacgaattcacaacaatt 9522059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 9526622 - 9526798
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||     |||||| ||||||||||| ||    
T  9526622 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttgctgttt-----tgtttggattatttgctaccc 9526716  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtat-agttttcgcaacaaattcacaacaat 183  Q
    | |||||||||||||||| |||||||||||| ||  |||||||||  |||||||| | | ||||| |||| |||||||||||||    
T  9526717 gcttgatttgattacttgttattaatttgctccacacatcaagtt--ttattggtgtgatttttctcaacgaattcacaacaat 9526798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 3091131 - 3090957
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttga 106  Q
    |||||| |||||||||| | |||||| |||||||||||||  ||||||| ||||||||||| | |||| ||||||||||||||| |||  ||||| ||||    
T  3091131 catcattagaccgaactggataaacagattcttgtgttcttcttcttccctttatctcttgatatttatttttgtttgaattatattgtcatccgcttga 3091032  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||| |||| | || ||||||| ||  ||| || ||| |||||||| | ||||| ||||| ||||||||||||||    
T  3091031 tttgatttcttggt-tttatttgctccacacatgaaattt-ttattggtgt-gtttttgcaacgaattcacaacaatt 3090957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 2232822 - 2232926
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 175  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||  |||||||||| |||||||| | | ||||| |||| |||||    
T  2232822 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacacatcaagttt-ttattggtgtggtttttctcaacgaattc 2232920  T
Q  176 acaaca 181  Q
    ||||||    
T  2232921 acaaca 2232926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 14997199 - 14997281
Alignment:
Q  9 atcatcagaccgaacttggtaaacaaatt-cttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 91  Q
    ||||| |||||||||| ||||||||||||  |||||||||||||||||| ||||||| |||||||||| ||||| |||||||||    
T  14997199 atcattagaccgaactaggtaaacaaattatttgtgttctctttcttcc-tttatctattgctgtttatttttgcttgaattat 14997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 17799450 - 17799277
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  17799450 catcattagaccgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgttgtttacttttgtttgaattatttgctacccgcttgat 17799351  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| ||||||||| |||||   ||||||||| |||||||| | |||||| |||| ||||||||||||    
T  17799350 ttgattacttggtattaatttacttcacatatcaagttt-ttattggtgtggttttcacaacgaattcacaacaa 17799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 3276455 - 3276626
Alignment:
Q  9 atcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatt 108  Q
    ||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  3276455 atcattagaccgaactgggtaaacaaattcttgtgttcttcttcttccttttatctcttgctgtttacttttgtttggattatttgctacccgcttgatt 3276554  T
Q  109 tgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||||||| |||||||||||| || ||||||||||| |||||||| | |||||  |||  |||||||||||    
T  3276555 tgattacttgttattaatttgctccacgcatcaagttt-ttattggtgtggttttaacaaggaattcacaaca 3276626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 21034025 - 21034173
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgtttga 106  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||| ||||    
T  21034025 catcattagaccgaactgggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttattttggattatttgctacccgcttga 21034124  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  21034125 tttgattacttggtattaatttgctccacgcatcaagttttttattggt 21034173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 23179587 - 23179410
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccg 101  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||  ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23179587 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgtttgaattatttgctacccg 23179488  T
Q  102 tttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
     |||||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||    
T  23179487 cttgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttcacaacgaattcacaaca 23179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 26268256 - 26268084
Alignment:
Q  9 atcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatt 108  Q
    ||||| ||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||    
T  26268256 atcattagaccgaactgagtaaacaaattcttgtgttctacttcttccttttatctcttgctgtttacttttgtttgaattattttctaccagcttgatt 26268157  T
Q  109 tgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    | ||||| || |||||||||||| || |||||||||||||||||||| | ||||||  ||| |||||||||||    
T  26268156 taattacatggtattaatttgctccacgcatcaagtttattattggtgtggttttcagaacgaattcacaaca 26268084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 9021133 - 9020955
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  9021133 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctcttgctgtttacttttgtttggattatttgctacccgct 9021034  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    ||||||||||||||| |||||||||||| || |||| |||| | |||||||| | |||||| | ||||||||||||||||    
T  9021033 tgatttgattacttggtattaatttgctccacgcattaagtct-ttattggtgtggttttctcgacaaattcacaacaat 9020955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 33032810 - 33032973
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgat 107  Q
    |||||| | |||||||| |||||| ||| | |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||  || |||||    
T  33032810 catcattaaaccgaactgggtaaaaaaaattttgtgttctccttcttccttttatctcttgccgtttacttttgttttaattatttgctactcgcttgat 33032909  T
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaa 171  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||| | |||||| ||||||    
T  33032910 ttgattacttgatattaatttgctctatgcatcaagttttttattggtgtcgttttcacaacaa 33032973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 28890921 - 28891098
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || |||||||||||||| |||||||||    ||||||| ||||||||||| ||    
T  28890921 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctgttgctgttt----ttgtttggattatttgctaccc 28891016  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    | |||||||||||||||| |||||||||||| |||||||||||||  |||||||| | |||||| |||| ||||||||||||||    
T  28891017 gcttgatttgattacttggtattaatttgctccatgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacaatt 28891098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 28895658 - 28895834
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||    ||||||| ||||||||||| ||    
T  28895658 catcattagaccgaactgggtaaacaaatatcttgtgttctttatctctctcttccttttatctcttgctgttt----ttgtttggattatttgctaccc 28895753  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    | |||||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||||    
T  28895754 gcttgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacaat 28895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 590947 - 591126
Alignment:
Q  5 ggacatcatcagaccgaacttggtaaacaaattcttgtgttctctt-----tcttccttttatctcttgctgtttacttttgtttgaattatttgctatc 99  Q
    ||||||||| |||||||||| |||||| ||||||||||||||| ||     ||||||||||||||||||||||||  |||| || || |||||||||| |    
T  590947 ggacatcattagaccgaactgggtaaataaattcttgtgttcttttctctctcttccttttatctcttgctgttttattttattgga-ttatttgctacc 591045  T
Q  100 cgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    || |||||||||||||||| |||||||||  | || ||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  591046 cgcttgatttgattacttggtattaattttttccacgcatcaaattt-ttattggtgtggttttctcaacgaattcacaaca 591126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 4812453 - 4812336
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  4812453 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 4812359  T
Q  156 atagttttcgcaacaaattcaca 178  Q
     | |||||| |||| ||||||||    
T  4812358 gtggttttctcaacgaattcaca 4812336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 16757242 - 16757107
Alignment:
Q  45 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 144  Q
    ||||| ||| || |||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  16757242 tctctctctcccctttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 16757147  T
Q  145 ttattattggtatag-ttttcgcaacaaattcacaacaatt 184  Q
    || |||||||| | | ||||| |||| ||||||||||||||    
T  16757146 tt-ttattggtgtggtttttctcaacgaattcacaacaatt 16757107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 25684798 - 25684972
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttcttcct----tttatctcttgctgtttacttttgtttgaattatttgctatccgt 102  Q
    |||||| |||||||||| ||||||||||| ||||||||||| | |||  ||    ||||| |||||||||||   |||||||| ||||||||||| ||      
T  25684798 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttttttatttcttgctgttt---tttgtttggattatttgctacccac 25684894  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||| |||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  25684895 ttgttttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 25684972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 30423371 - 30423453
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat 91  Q
    |||||| |||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  30423371 catcattagaccgaacagggtaaacaaattcttgtgttctccttcttcc-tttatctcttgctgtttatttttgtttgaattat 30423453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 16752550 - 16752374
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttcttcct------tttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| ||||||||||| | |||  ||      |||||||||||||||||    ||||||| ||||||||||| ||    
T  16752550 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctctcctttatctcttgctgttt----ttgtttggattatttgctaccc 16752455  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaaca 181  Q
    | |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||||||||    
T  16752454 gcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaaca 16752374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 28328135 - 28328242
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 175  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  28328135 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 28328233  T
Q  176 acaacaatt 184  Q
    |||||||||    
T  28328234 acaacaatt 28328242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 28332858 - 28332962
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattc 175  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| |||||    
T  28332858 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattc 28332956  T
Q  176 acaaca 181  Q
    ||||||    
T  28332957 acaaca 28332962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 29554803 - 29554705
Alignment:
Q  81 gtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaac 180  Q
    ||||| ||||||||||| | | |||||||||||||||||||||||||| || || ||||||||  |||||||||| | |||||| |||| ||||||||||    
T  29554803 gtttggattatttgctaccagcttgatttgattacttgatattaatttactccacgcatcaag--tattattggtgtggttttctcaacgaattcacaac 29554706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 4823622 - 4823548
Alignment:
Q  108 ttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    ||||||||||| ||||||||| || ||  ||||||||||  ||||||| | |||||| |||| ||||||||||||||    
T  4823622 ttgattacttggtattaattttctccacacatcaagttt--tattggtgtggttttctcaacgaattcacaacaatt 4823548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 3005648 - 3005616
Alignment:
Q  16 gaccgaacttggtaaacaaattcttgtgttctc 48  Q
    ||||||||| |||||||||||||||||||||||    
T  3005648 gaccgaactgggtaaacaaattcttgtgttctc 3005616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 12166172 - 12166007
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttctt-ccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttga 106  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||| ||| ||||    
T  12166172 catcattagaccgaactgggtaaacaaattcttgtgttctccttctttccttttatctcttgtcgtttacttttgtttgaattatttgctacccgcttga 12166073  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaa 172  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||| | |||||| |||||||    
T  12166072 tttgattacttggtattaatttgctccacgcatcaagtttattattggtgtggttttcacaacaaa 12166007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 19701898 - 19701756
Alignment:
Q  39 ttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgca 138  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | || |||    
T  19701898 ttgtgttctctttcttccttttatctcttgttgtttacttttgtttgaattatttgctatccgtttgatttgattacttggt-ttaatttgttccacgca 19701800  T
Q  139 tcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||||||||| | |||||| |||| ||||||||||||    
T  19701799 tcaagtttattattggtgtggttttcacaacgaattcacaacaa 19701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 13467486 - 13467318
Alignment:
Q  15 agaccgaacttggtaaacaaattcttgtgttctctttcttcctttt--atctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgat 112  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13467486 agaccgaactaggtaaacaaattcttgtgttctccttcttccttttttatctcttactgtttacttttgtttgaatcatttgctacccgtttgatttgat 13467387  T
Q  113 tacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||| ||||||||| || || ||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  13467386 tacttggtattaatttactccacgcatcaaattttttattggtgtggttttcacaacgaattcacaaca 13467318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 25941825 - 25942003
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||| ||    
T  25941825 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccgctt 25941924  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||| |||||||||| | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  25941925 gatttgattacttggtattaatttgttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 25942003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 3577516 - 3577338
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccg 101  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||  ||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  3577516 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgtttggattatttgctacccg 3577417  T
Q  102 tttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
     |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  3577416 cttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 3577338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 17694878 - 17694698
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgttt-gaattatttgctatccgt 102  Q
    |||||| |||||||||| ||||||||||||||||||||||    || |||||||||||||| ||||||||||||||||||| | |||||||||||||||     
T  17694878 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctcttccttttatctattgctgtttacttttgttttggattatttgctatccgc 17694779  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||||| |||||||||||| ||  |||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  17694778 ttgatttgattacttggtattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 17694698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 26643339 - 26643468
Alignment:
Q  17 accgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  26643339 accgaactgggtaaacaaattcttgtgttctccttcttccttctatctcttactgtttacttttgtttgaattattttctatccgcttgatttcattact 26643438  T
Q  117 tgatattaatttgcttcatgcatcaagttt 146  Q
    || |||||||||||| || |||||||||||    
T  26643439 tggtattaatttgctccacgcatcaagttt 26643468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 26749305 - 26749434
Alignment:
Q  17 accgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattact 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  26749305 accgaactgggtaaacaaattcttgtgttctccttcttccttctatctcttactgtttacttttgtttgaattattttctatccgcttgatttcattact 26749404  T
Q  117 tgatattaatttgcttcatgcatcaagttt 146  Q
    || |||||||||||| || |||||||||||    
T  26749405 tggtattaatttgctccacgcatcaagttt 26749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 33215983 - 33216160
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtt---tacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||   |  ||||||||| ||||||||||| ||| ||    
T  33215983 catcattagaccgaactgggtaaacaaattcttgtgttctctttcttccgtttatctcttgctgttcgtttattttgtttggattatttgctacccgctt 33216082  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||| |||||||||| |||||||||||| || ||||||||||| |||||||| | |||||  |||  ||||||||||||    
T  33216083 gatatgattacttggtattaatttgctccacgcatcaagttttttattggtgtggtttttacaaggaattcacaacaa 33216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 25465925 - 25465754
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttactttt--gtttgaattatttgctatccgtttg 105  Q
    |||||| |||||||||| |||||||||||| |||||||||   ||||||||||||||||||||||||  ||||  ||||| |||||||||||  || |||    
T  25465925 catcattagaccgaactgggtaaacaaattattgtgttct---tcttccttttatctcttgctgttttattttttgtttggattatttgctacacgcttg 25465829  T
Q  106 atttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    ||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  25465828 atttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 25465754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 22342827 - 22342651
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct---ctttcttccttttatctcttgctgtttacttttgtt-tgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| || ||||||||||| ||| |    
T  22342827 catcattagaccgaactgggtaaacaaattcttgtgttcttcatcttcttccttttatctcttgctgtttacttttgttatggattatttgctacccgct 22342728  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    ||||||||||| ||| |||||||||||| ||| |||||||||  |||||||| |  ||||  |||| ||||||||||||    
T  22342727 tgatttgattatttggtattaatttgctccatacatcaagtt--ttattggtgtgatttttacaacgaattcacaacaa 22342651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 13883630 - 13883806
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || |||  |||||||||||||||||||    ||||||| ||||||||||| ||    
T  13883630 catcattagaccgaactgggtaaacaaatatcttgtgttctatctctctctctctcttttatctcttgctgttt----ttgtttggattatttgctaccc 13883725  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    |||||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  13883726 gtttgatttgattacttggtattaatttgctccacgcatcaagttttttattggtgtggttttctcaacgaattcacaaca 13883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 22351868 - 22351701
Alignment:
Q  19 cgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttg-tttgaattatttgctatccgtttgatttgatta 114  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||||    
T  22351868 cgaactgggtaaacaaattcttgtgttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgttacccgcttgatttgatta 22351769  T
Q  115 cttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||| |||||||||||| ||  |||||||||  |||||||| |  ||||  |||| ||||||||||||||    
T  22351768 cttggtattaatttgctccacacatcaagtt--ttattggtgtgatttttacaacgaattcacaacaatt 22351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 31248664 - 31248544
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  31248664 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 31248570  T
Q  156 atagttttcgcaacaaattcacaaca 181  Q
     | |||||| |||| |||||||||||    
T  31248569 gtggttttctcaacgaattcacaaca 31248544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 17038390 - 17038541
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct--------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctat 98  Q
    |||||| |||||||||| ||||||||||| |||||||||||        || |||||||||||| |||||||||||    ||||||| |||||||||||     
T  17038390 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctcttccttttatttcttgctgttt----ttgtttggattatttgctac 17038485  T
Q  99 ccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    ||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  17038486 ccgcttgatttgattacttggtattaatttgctccatgcatcaagttt-ttattggt 17038541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 17066008 - 17066179
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattat-ttgctatccgtttga 106  Q
    |||||| |||||||||| | |||||| ||| ||| |||||| |||||||||| ||||||||||||||| ||||||||||||||| |||  | | | ||||    
T  17066008 catcattagaccgaactggataaacagattattgggttctccttcttccttt-atctcttgctgtttatttttgtttgaattatattgtcaccagcttga 17066106  T
Q  107 tttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 179  Q
    ||||||| |||||| ||||||| || || |||||| |||| |||||||| | |||||| |||  |||||||||    
T  17066107 tttgattgcttgattttaatttactccacgcatcaggttttttattggtgtggttttcacaatgaattcacaa 17066179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 13878938 - 13879073
Alignment:
Q  45 tctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagt 144  Q
    ||||| |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || |||||||||    
T  13878938 tctctctctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagt 13879033  T
Q  145 ttattattggtatag-ttttcgcaacaaattcacaacaatt 184  Q
    || || ||||| | | ||||| |||| ||||||||||||||    
T  13879034 tt-tttttggtgtggtttttctcaacgaattcacaacaatt 13879073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 35201276 - 35201156
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||| ||    
T  35201276 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttg-tattaatttgctccacgcatcaagttt-ttattagt 35201183  T
Q  156 atagttttcgcaacaaattcacaacaa 182  Q
     | |||||| |||| ||||||||||||    
T  35201182 gtggttttctcaacgaattcacaacaa 35201156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 26887253 - 26887076
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttct-------tccttttatctcttgctgtttacttttgtttgaattatttgctatc 99  Q
    |||||| |||||||||| ||||||||||| ||||||||||| | |||       ||||||||||||||||||     ||||||||| |||| |||||| |    
T  26887253 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctctccttttatctcttgctg----gttttgtttggattaattgctacc 26887158  T
Q  100 cgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
    || ||| ||||||||||||||||||||||||| ||  |||||||||| |||||||| | |||||| | || ||||||||||||    
T  26887157 cgcttgttttgattacttgatattaatttgctccacacatcaagttt-ttattggtgtggttttctcgacgaattcacaacaa 26887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 16786162 - 16786265
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 176  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||  | |||||| | | |||||| |||||||||||    
T  16786162 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaag--tcttattgttgtggttttctcaacaaattca 16786259  T
Q  177 caacaa 182  Q
    ||||||    
T  16786260 caacaa 16786265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 5165771 - 5165690
Alignment:
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||||| |||||||||||| || |||||||||||||||||||| |  ||||| |||| ||||||| ||||||    
T  5165771 ttgatttgattacttggtattaatttgctccacgcatcaagtttattattggtgtgtttttcacaacgaattcacgacaatt 5165690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 30987475 - 30987389
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagttt 146  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||  |||||||||||||||| |||||||||||| || |||||||||||    
T  30987475 cttttatctcttgctgttt----ttgtttggattatttgctacccacttgatttgattacttggtattaatttgctccacgcatcaagttt 30987389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 37170761 - 37170605
Alignment:
Q  26 ggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaa 125  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| ||||||    
T  37170761 ggtaaacaaattattgtgttctccttcttccttttatctcttgctgtttacttttgtttgaattatttactacccacttgatttgattacttggtattaa 37170662  T
Q  126 tttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaat 183  Q
    |||||| || ||||||||||| |||||||| |  ||||| |||| |||||||||||||    
T  37170661 tttgctccacgcatcaagttt-ttattggtgtgattttcacaacgaattcacaacaat 37170605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 20054791 - 20054607
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  20054791 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctatcc 20054692  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaag-tttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    | |||||||||||||||| |||||||||||| || |||||||| ||| |||||||| | |||||| |||| ||||||||||||||    
T  20054691 gcttgatttgattacttggtattaatttgctccacgcatcaagtttttttattggtgtggttttctcaacgaattcacaacaatt 20054607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 27517665 - 27517482
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| ||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||| |||||| ||||||||| ||||||||||| ||| ||    
T  27517665 catcattagaccgaacttggtaaacaaattcttgtgttcttcttcttcttccctttatctcttgttgtttatttttgtttggattatttgctacccgctt 27517566  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaattttaaat 190  Q
    |||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||  |||||||    
T  27517565 gatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacagatttaaat 27517482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 20050047 - 20049866
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctt--tcttccttttatctcttgctgtttacttttgttt-gaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||||||||||||||    |||  |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  20050047 catcattagaccgaactgggtaaacaaattcttgtgttcttcttcttcttcttccttttatctcttgctgtttacttttgttttggattatttgctatcc 20049948  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaag-tttattattggtatagttttcgcaacaaattcacaaca 181  Q
    | |||||||||||||||| |||||||||||| || |||||||| ||| |||||||| | |||||| |||| |||||||||||    
T  20049947 gattgatttgattacttggtattaatttgctccacgcatcaagtttttttattggtgtggttttctcaacgaattcacaaca 20049866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 22717264 - 22717080
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgcta 97  Q
    |||||| |||||||||| ||||||||||||||||||||||          || ||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  22717264 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctctctctcttccttttatctcttgctgtttatttttgtttggattaattgcta 22717165  T
Q  98 tccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
     ||| |||||||||||||||| |||||||||||| |||||||||||||  |||||||| | |||||| |||| ||||||||||||||    
T  22717164 cccgcttgatttgattacttggtattaatttgctccatgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacaatt 22717080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 38191168 - 38191346
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctg------tttacttttgtttgaattatttgctatccg 101  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||      |||  ||||||||||||||||||||| |||    
T  38191168 catcattagaccgaactgggtaaacaaattcttgtgttctccttcttccttttatctcttgctgtttgtttttttttttgtttgaattatttgctacccg 38191267  T
Q  102 tttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaa 182  Q
     |||||||||||||||| |||||||||||| || |||| |||||  |||||||| |  ||||| |||| ||||||||||||    
T  38191268 cttgatttgattacttggtattaatttgctccacgcattaagtt--ttattggtgtgattttcacaacgaattcacaacaa 38191346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 17943691 - 17943867
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtt 103  Q
    |||||| |||||||||| ||||||||||||||||||||||    ||||||||| | |||||||||||||||  ||| ||||| ||||||||||| ||| |    
T  17943691 catcattagaccgaactaggtaaacaaattcttgtgttctttctctttcttccctctatctcttgctgttttattt-gtttggattatttgctacccgct 17943789  T
Q  104 tgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    | ||||||||||||| |||||||||||| || ||||||||||| |||||||| |  ||||| |||| |||||||||||    
T  17943790 taatttgattacttggtattaatttgctccacgcatcaagtttgttattggtgtgtttttctcaacgaattcacaaca 17943867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 2736360 - 2736539
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||  ||||||||| ||||||||||| ||    
T  2736360 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttgctgttt--ttttgtttggattatttgctaccc 2736457  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    | |||||||||||||||| ||||||||||||  | ||||||||||  |||||||| | |||||| |||| ||||||||||||||    
T  2736458 gcttgatttgattacttggtattaatttgctctacgcatcaagtt--ttattggtgtggttttctcaacgaattcacaacaatt 2736539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 12781247 - 12781075
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----ctttcttccttttatctcttgctgtttactttt-gtttgaattatttgctatccgt 102  Q
    |||||| |||||||||| |||||||||||| |||||||||    || ||||||||||||||||||   | ||||||| ||||| ||||||||||| |||     
T  12781247 catcattagaccgaactaggtaaacaaattattgtgttctttctctctcttccttttatctcttg---tctactttttgtttggattatttgctacccgc 12781151  T
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 179  Q
    |||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||||| |||| |||||||||    
T  12781150 ttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtatggttttctcaacgaattcacaa 12781075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 22712555 - 22712374
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct----------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgcta 97  Q
    |||||| |||||||||| ||||||||||||||||||||||          || ||||||||||||||||||||||||| ||||||||| |||| ||| ||    
T  22712555 catcattagaccgaactgggtaaacaaattcttgtgttctttctctctctctctcttccttttatctcttgctgtttatttttgtttggattaattgata 22712456  T
Q  98 tccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
     ||| |||||||||||||||| |||||||||||| || ||||||||||  |||||||| | |||||| |||| |||||||||||    
T  22712455 cccgcttgatttgattacttggtattaatttgctccacgcatcaagtt--ttattggtgtggttttctcaacgaattcacaaca 22712374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 30479150 - 30479322
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct-ctt--tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgttt 104  Q
    |||||| |||||||||| ||||||||||||||||| |||| |||  ||||||||||||||||||||||||| ||||||||| ||||||||||| ||  ||    
T  30479150 catcattagaccgaactgggtaaacaaattcttgtattcttcttcttcttccttttatctcttgctgtttatttttgtttggattatttgctacccactt 30479249  T
Q  105 gatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaa 179  Q
    |||||||||| ||  | ||||||| || || ||||||||  |||||||| | | |||||| ||||||||||||||    
T  30479250 gatttgattattttgtgttaatttactccacgcatcaag--tattattgatgtggttttctcaacaaattcacaa 30479322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 2741096 - 2741261
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || ||||||||||||||||||||||||  ||||||||| ||||||||||| ||    
T  2741096 catcattagaccgaactaggtaaacaaatatcttgtgttctttctctctctcttccttttatctcttgctgttt--ttttgtttggattatttgctaccc 2741193  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaaca 170  Q
    | |||||||||||||||| ||||||||||||  | ||||||||||  |||||||| | |||||| |||||    
T  2741194 gcttgatttgattacttggtattaatttgctctacgcatcaagtt--ttattggtgtggttttctcaaca 2741261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 33670993 - 33670817
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| ||||||||||  |||||||||| |||||||||||      || ||||||||||| ||||||||||||   |||||||| ||||||||||| ||    
T  33670993 catcattagaccgaactgcgtaaacaaatatcttgtgttctttctctctctcttccttttacctcttgctgttt---tttgtttggattatttgctaccc 33670897  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaaca 181  Q
    | |||||||||||||||| |||||||||| | || ||||||||||| |||||||| | |||||| |||| |||||||||||    
T  33670896 gcttgatttgattacttggtattaatttgatccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaaca 33670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 45679878 - 45680057
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttct------ctttcttccttttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| |||||||||||      || |||  |||||||||||||||||||    ||||||| ||||||||||| ||    
T  45679878 catcattagaccgaactgggtaaacaaatatcttgtgttctttctctctctctctcttttatctcttgctgttt----ttgtttggattatttgctaccc 45679973  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaacaatt 184  Q
    | |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| ||||||||||||||    
T  45679974 gcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaatt 45680057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 39680200 - 39680380
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttcttcct------tttatctcttgctgtttacttttgtttgaattatttgctatcc 100  Q
    |||||| |||||||||| ||||||||||| ||||||||||||| |||  ||      |||| ||||||||||||   |||||||| ||||||||||| ||    
T  39680200 catcattagaccgaactgggtaaacaaatatcttgtgttctctctctctctctctcctttaactcttgctgttt---tttgtttggattatttgctaccc 39680296  T
Q  101 gtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatag-ttttcgcaacaaattcacaacaatt 184  Q
    | |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | | ||||| |||| ||||||||||||||    
T  39680297 gcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggtttttctcaacgaattcacaacaatt 39680380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 39687201 - 39687321
Alignment:
Q  58 tttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtat 157  Q
    |||| ||||||||||||   |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| |    
T  39687201 tttaactcttgctgttt---tttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgt 39687296  T
Q  158 ag-ttttcgcaacaaattcacaaca 181  Q
     | ||||| |||| |||||||||||    
T  39687297 ggtttttctcaacgaattcacaaca 39687321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 17462664 - 17462768
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 176  Q
    |||||| || |||| |||||| ||| |||||||||||||| | |||||||||||| ||  |||||||||| |||||||| | |||||| |||| ||||||    
T  17462664 ttttgtgtggattaattgctacccgcttgatttgattactcggtattaatttgctccacacatcaagttt-ttattggtgtggttttctcaacgaattca 17462762  T
Q  177 caacaa 182  Q
    ||||||    
T  17462763 caacaa 17462768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 28458854 - 28458770
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttctctttcttccttttatctcttgctgtttacttttgtttgaattattt 93  Q
    |||||| ||||| |||| ||||||||| ||||||||||||| ||| ||| |||||| ||||||||||| ||||| |||||||||||    
T  28458854 catcattagaccaaactgggtaaacaatttcttgtgttctccttcgtcc-tttatcccttgctgtttatttttgcttgaattattt 28458770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 17704 - 17824
Alignment:
Q  56 cttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  17704 cttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 17798  T
Q  156 atagttttcgcaacaaattcacaaca 181  Q
     | |||||| |||| |||||||||||    
T  17799 gtggttttctcaacgaattcacaaca 17824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 231321 - 231445
Alignment:
Q  51 tcttccttttatctcttgctgtttacttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttatta 150  Q
    |||| |||||||||||||||||||    ||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||  |||    
T  231321 tctttcttttatctcttgctgttt----ttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagtt--tta 231414  T
Q  151 ttggtatagttttcgcaacaaattcacaaca 181  Q
    ||||| | |||||| |||| |||||||||||    
T  231415 ttggtgtggttttctcaacgaattcacaaca 231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 3022 - 2918
Alignment:
Q  77 ttttgtttgaattatttgctatccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattca 176  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||| |||||||| | |||||| |||| ||||||    
T  3022 ttttgtttggattatttgctacccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggtgtggttttctcaacgaattca 2924  T
Q  177 caacaa 182  Q
    ||||||    
T  2923 caacaa 2918  T

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Target: scaffold0256 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 16481 - 16632
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaat-tcttgtgttctctttctt--------ccttttatctcttgctgtttacttttgtttgaattatttgctat 98  Q
    |||||| |||||||||| ||||||||||| ||||||||||| ||||||        |||||||| |||||||||||    ||||||| |||||||||||     
T  16481 catcattagaccgaactgggtaaacaaatatcttgtgttctttttctttctctcttccttttatttcttgctgttt----ttgtttggattatttgctac 16576  T
Q  99 ccgtttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggt 155  Q
    ||| |||||||||||||||| |||||||||||| || ||||||||||| ||||||||    
T  16577 ccgcttgatttgattacttggtattaatttgctccacgcatcaagttt-ttattggt 16632  T

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Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 16962 - 16882
Alignment:
Q  103 ttgatttgattacttgatattaatttgcttcatgcatcaagtttattattggtatagttttcgcaacaaattcacaacaatt 184  Q
    |||||||||||||||| |||||||||  | || ||||||||||| |||||||| | |||||| |||| ||||||||||||||    
T  16962 ttgatttgattacttggtattaattttttccacgcatcaagttt-ttattggtgtggttttctcaacgaattcacaacaatt 16882  T

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Target: scaffold0209; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 17012 - 16973
Alignment:
Q  8 catcatcagaccgaacttggtaaacaaattcttgtgttct 47  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  17012 catcattagaccgaactgggtaaacaaattcttgtgttct 16973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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