View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2594_low_9 (Length: 360)
Name: NF2594_low_9
Description: NF2594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2594_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 56 - 325
Target Start/End: Complemental strand, 52840069 - 52839800
Alignment:
| Q |
56 |
tgtttgaaattagaagaggaagtgagaatatatttgtgaatgaaaacaaaacaataacaggaaacggctcgttagtgaattcgannnnnnnggagccttc |
155 |
Q |
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| T |
52840069 |
tgtttgaaattagaagaggaagtgagaatatatttgtgaatgaaaacaaaacaataataggaaacggctcgttagtgaattcgatttttttggagccttc |
52839970 |
T |
|
| Q |
156 |
atttctttgtcgccgttgttgtcttcgcgagccactgttgcttttttcttcatggtgtgtcggcaagaaccttatcgccggttccatggaggcttcgtgt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52839969 |
atttctttgtcgccgttgttgtcttcgcgagccactattgcttttttcttcatggtgtgtcggcaagagccttatcgccggttccatggaggcttcgtgt |
52839870 |
T |
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| Q |
256 |
gttgtaacttgtaatagtactttgaattgatgattttttcattgcttaatggcatatatgattttggagg |
325 |
Q |
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| T |
52839869 |
gttgtaacttataatagtactttgaattgatgattttttcattgtttaatggcatatatgattttggagg |
52839800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 52840112 - 52840140
Alignment:
| Q |
32 |
aaaattgatttcagattttcattttgttt |
60 |
Q |
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| T |
52840112 |
aaaattgatttcagattttcattttgttt |
52840140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 56 - 325
Target Start/End: Complemental strand, 24488312 - 24488043
Alignment:
| Q |
56 |
tgtttgaaattagaagaggaagtgagaatatatttgtgaatgaaaacaaaacaataacaggaaacggctcgttagtgaattcgannnnnnnggagccttc |
155 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24488312 |
tgtttgaaattagaagaggaagtgagaatagatttgtgaatgaaaacaaaacaataacatgaaacggctcgttagtgaattcgatttttttggagccttc |
24488213 |
T |
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| Q |
156 |
atttctttgtcgccgttgttgtcttcgcgagccactgttgcttttttcttcatggtgtgtcggcaagaaccttatcgccggttccatggaggcttcgtgt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
24488212 |
gtttctttgtcgccgttgttgtcttcgcgagccactgttgcttttttcttcatggtgtgtcggcgagaaccttatcgccggttccatggaggcttagtgt |
24488113 |
T |
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| Q |
256 |
gttgtaacttgtaatagtactttgaattgatgattttttcattgcttaatggcatatatgattttggagg |
325 |
Q |
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| T |
24488112 |
gttgtaacttgtaatagcactttgaattgatgattttttcattgcttaatggcatatatgattttggagg |
24488043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 56 - 321
Target Start/End: Original strand, 36221640 - 36221905
Alignment:
| Q |
56 |
tgtttgaaattagaagaggaagtgagaatatatttgtgaatgaaaacaaaacaataacaggaaacggctcgttagtgaattcgannnnnnnggagccttc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
36221640 |
tgtttgaaattagaagaggaagtgagaatagatttgtgaatgaaaacaaaacaattacaggaaacggctcgttagtgaattcgattttttcggagccttc |
36221739 |
T |
|
| Q |
156 |
atttctttgtcgccgttgttgtcttcgcgagccactgttgcttttttcttcatggtgtgtcggcaagaaccttatcgccggttccatggaggcttcgtgt |
255 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || |
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| T |
36221740 |
gtttctttgtcgccattattgtcttcgcgagccactgttgcttttttcttcatggtgtgtcggcgaaaaccttatcgccggttccatggaggcttcgagt |
36221839 |
T |
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| Q |
256 |
gttgtaacttgtaatagtactttgaattgatgattttttcattgcttaatggcatatatgattttg |
321 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36221840 |
gttgtaacttgtaacagcactttgaattgatgattttttcattgcttaatggcatatatgattttg |
36221905 |
T |
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