View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2595_high_1 (Length: 429)
Name: NF2595_high_1
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 39185117 - 39185497
Alignment:
| Q |
14 |
cacaaatcactatacacgattgcataacattaacagcatcaaacgtttacaaatatgtagacaaaaataatctcgatcaaaattgagactgtacggttta |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39185117 |
cacaaatcactatacacgattgtataacattaacagcatcaaacgtttacaaat--------------aatctcgatcaaaattgagactgtacggttta |
39185202 |
T |
|
| Q |
114 |
gatcacacaattaccaaatcatttttaaatcgaacggttaggatcaatgataagatcatcacgatcaataactgtatcacacacagttacttccaaatga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39185203 |
gatcacacaattaccaaatcatttttaaatcgaacggttaggatcaatgataagatcatcacgatcaataactgtatcacacacagttacttccaaatga |
39185302 |
T |
|
| Q |
214 |
cacatgcaaaccgttatggcaaaagcaaatgccgccgccggcgtaccgccgaagtaaacgcggcggaaaaatcgccaccggtaagcgcaaaaatcgaaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39185303 |
cacatgcaaaccgttatggcaaaagcaaatgtcgccgccggcgtaccgccgaagtaaacgcggcggaaaaatcgccaccgttaagcgcaaaaatcgaaaa |
39185402 |
T |
|
| Q |
314 |
tcctaacgatcatgactaaatgcaaacgaaaacggttatagcggaacagaaccgcctccgccgaagtcaaagcggtggaagacgaacagaagatc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39185403 |
tcctaacgatcatgactaaatgcaaacgaaaacggttatagcggaacagaaccgcctccgccgaagtcaaagcggtggaagacgaacagaagatc |
39185497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University