View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2595_high_5 (Length: 250)
Name: NF2595_high_5
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_high_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 45450218 - 45450455
Alignment:
| Q |
13 |
aatatcatcatgtttctcattccatcttataacaactgtcacacttacatacnnnnnnnntgtttctaaaaaagagtgtgtcattttcatttttcaacat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45450218 |
aatatcatcatgtttctcattccatcttataacaactgtcacacttacatacaaaaaaaatgtttctaaaaaagagtgtgtcattttcatttttcaacat |
45450317 |
T |
|
| Q |
113 |
agttttaattgatgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactttcatttatttatgataatgaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45450318 |
agttttaattgatgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactttcatttatttatgataatgaaaat |
45450417 |
T |
|
| Q |
213 |
acaccaatgactaataagaatgatttagtgaaatcttc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45450418 |
acaccaatgactaataagaatgatttagtgaaatcttc |
45450455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 32613919 - 32613790
Alignment:
| Q |
90 |
gtgtcattttcatttttcaacatagttttaattga-tgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactt |
188 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||| | ||| |||||||| | ||||| ||||| |||| ||||||| |||| |||||||||||||| |
|
|
| T |
32613919 |
gtgtcactttcaattttcaatgtagttttaattgaatttttccaattgtaccatctaactaatacaatgtgcatcactcccaagttattattttctactt |
32613820 |
T |
|
| Q |
189 |
tcatttatttatgataatgaaaatacaccaatg |
221 |
Q |
| |
|
| | ||||||||||||||||||||| ||||| |
|
|
| T |
32613819 |
t---tcatttatgataatgaaaatacatcaatg |
32613790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University