View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_high_9 (Length: 214)
Name: NF2595_high_9
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21182409 - 21182196
Alignment:
| Q |
1 |
aacaacaactataatacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaagcgattttatggcagagttttaatcacc |
100 |
Q |
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| T |
21182409 |
aacaacaactataatacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaacagattttatggcagagttttaatcacc |
21182310 |
T |
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| Q |
101 |
ccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatggacaactgcagaagaccctgctcc |
200 |
Q |
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| T |
21182309 |
ccacggatacccttttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatggacaactgcagaagaccctgctcc |
21182210 |
T |
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| Q |
201 |
tggaccgtatactc |
214 |
Q |
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|||||||||||||| |
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| T |
21182209 |
tggaccgtatactc |
21182196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 23177566 - 23177729
Alignment:
| Q |
15 |
tacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaagcgattttatggcagagttttaatcaccccacggataccctt |
114 |
Q |
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| T |
23177566 |
tacctacgcaaccctcttggacacaggaaacttggtactggtgaataattctaaccaagcaattttatggcagagttttgatcaccccacagataccctt |
23177665 |
T |
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| Q |
115 |
ttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatgga |
178 |
Q |
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| T |
23177666 |
ttgcctggaatgaacataggctacgatactgacacaggacacacttggtcattgagatcatgga |
23177729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 23186695 - 23186858
Alignment:
| Q |
15 |
tacctatgcaacgctcttggactcaggaaacttggtactattgaacgcctctaacaaagcgattttatggcagagttttaatcaccccacggataccctt |
114 |
Q |
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| T |
23186695 |
tacctacgcaaccctgttggacacaggaaacttggtactggtgaataagtctaaccaagtaattttatggcagagctttgataaccccaccgataccctt |
23186794 |
T |
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| Q |
115 |
ttacctggaatgaacatcggacacgatattaacacagggtacactttgtctttgagatcatgga |
178 |
Q |
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| T |
23186795 |
ttacctggaatgaccttaggacacgatacttacacaggacgtacttggtcattgagatcatgga |
23186858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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