View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_low_1 (Length: 470)
Name: NF2595_low_1
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 32646138 - 32646570
Alignment:
| Q |
19 |
ttctgaacataatcctcaaaccccagatcatggttccccttaagatatgcagatactaaaatcctatttttatccataacaaaatcctttttggacttct |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32646138 |
ttctgaacataatcctcaaacctcagatcatggttccccttaagatatgcagatactaaaatcctattttta-ccataacaaaatcctttttggacttct |
32646236 |
T |
|
| Q |
119 |
ccaagaaatattgtttactaggatcactaagaaatttgatcattgcttcaaagctatggttccattcagcatagcactgcattagatttttcacgcgata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
32646237 |
ccaagaaatattgtttactaggatcactaagaaatttgatcattgcttcaaagctatggttccattcagtatagcactgcatgagatttttcacgcgata |
32646336 |
T |
|
| Q |
219 |
atcaagaaagatatcttcaagacccggacaactatccactttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32646337 |
atcaagaaagatatcttcaagacccggacaactatccactttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtca |
32646436 |
T |
|
| Q |
319 |
ggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32646437 |
ggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagag |
32646536 |
T |
|
| Q |
419 |
aaaaaagcaagcatgcgacagtctttgtttttcc |
452 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
32646537 |
aaaaaagcaagcatgcaacagtctttgtttttcc |
32646570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 62 - 456
Target Start/End: Complemental strand, 32568198 - 32567804
Alignment:
| Q |
62 |
gatatgcagatactaaaatcctatttttatccataacaaaatcctttttggacttctccaagaaatattgtttactaggatcactaagaaatttgatcat |
161 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| || |
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| T |
32568198 |
gatatgcagatgctaaaatcctatttttatccataacaaaatcctttttggacatctccaagaaatattgtttgctaggatcactaagaaattcgataat |
32568099 |
T |
|
| Q |
162 |
tgcttcaaagctatggttccattcagcatagcactgcattagatttttcacgcgataatcaagaaagatatcttcaagacccggacaactatccactttc |
261 |
Q |
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|||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
32568098 |
tgctaccaaactatggttccattcagcatagcactgcatgagatttttcacgcgataatcaagaaagatatcttcaagacctggataactatccactttc |
32567999 |
T |
|
| Q |
262 |
attctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgca |
361 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32567998 |
attcttttcccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaacgaattgccacctgca |
32567899 |
T |
|
| Q |
362 |
aaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
456 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32567898 |
aaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcaacagtctttgtttttcctgtc |
32567804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 456
Target Start/End: Original strand, 32532330 - 32532527
Alignment:
| Q |
259 |
ttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacct |
358 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||| ||||||| |||| ||||||| ||||||||| |
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| T |
32532330 |
ttcatcctcttgccattgccaaatagcacaatgtcacccaaactatatgtatcatgctcaagtgaatccataactaacctattcaaccgacttgccacct |
32532429 |
T |
|
| Q |
359 |
gcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
456 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||| | ||||||||| || ||||| ||||| |||||| |
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| T |
32532430 |
gcaaaattgcagtattagttggagcacaagtcaatgttctggtttgtaacttgagtagagaaaataacaagcatgcaactgtcttagttttccctgtc |
32532527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 258 - 456
Target Start/End: Original strand, 32525937 - 32526135
Alignment:
| Q |
258 |
tttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacc |
357 |
Q |
| |
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|||||||||||||| ||| ||||| |||||||||||||||| ||||||||| ||| | ||| ||||||| |||| || |||||||| ||||||||||| |
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| T |
32525937 |
tttcattctcttactatttccaaagagcacaatgtcacctagaccatatgtttcaagctcaagtgaatccataaccaacctatgcaatcgaattgccact |
32526036 |
T |
|
| Q |
358 |
tgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
456 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||| | ||| |||| ||||| |||||| ||||||||||| || ||||| ||||| |||||| |
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| T |
32526037 |
tgcaaaactgcagtattagtaggagcacaagtcaatgttctggtttttaactcgagtaaagaaaatagcaagcatgcaactgtcttcgttttccctgtc |
32526135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 191 - 456
Target Start/End: Original strand, 32614772 - 32615037
Alignment:
| Q |
191 |
agcactgcattagatttttcacgcgataatcaagaaagatatcttcaagacccggacaactatccactttcattctcttaccattgccaaatagcacaat |
290 |
Q |
| |
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|||||||||| |||||| | || ||||||||||||||||||||| ||||||| ||| || ||| | |||||||||||| ||||||||| || ||||| |
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| T |
32614772 |
agcactgcatgagatttcttacacgataatcaagaaagatatctccaagacctggataagaatctaacttcattctcttattattgccaaagagaacaat |
32614871 |
T |
|
| Q |
291 |
gtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcacaggtc |
390 |
Q |
| |
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||| |||||||| ||||||||||| ||| |||||| ||||||||||||| | | | ||||||| ||||||||||| ||||| |||||||| || || |
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| T |
32614872 |
gtctcctaaaccgtatgtatcatgctcaactgaatccataactaaactatgtattctagttgccacttgcaaaattgcggtatttgttggagcgcaagtt |
32614971 |
T |
|
| Q |
391 |
aatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
456 |
Q |
| |
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| |||||| | ||| ||||||| ||||||||| | ||||||||| |||||||| ||||| |||||| |
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|
| T |
32614972 |
agtgttctggtttttaacttgaatagagaaaacaacaagcatgcaacagtcttcgttttccctgtc |
32615037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 28857227 - 28857310
Alignment:
| Q |
366 |
tgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttt |
449 |
Q |
| |
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||||||||||||||||||||| || |||||||| | ||| |||||||| || ||||| | |||| | || || ||||||||||| |
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| T |
28857227 |
tgcagtattagttggagcacatgttaatgttctggctttaaacttgagcagggaaaataacaaggaagccactgtctttgtttt |
28857310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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