View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_low_10 (Length: 236)
Name: NF2595_low_10
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1373296 - 1373517
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373296 |
ttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
1373395 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaaaacatggctactattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1373396 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaaaacatgcctactattt |
1373495 |
T |
|
| Q |
201 |
tagtttatttgagtttgttatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
1373496 |
tagtttatttgagtttgttatt |
1373517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1349998 - 1350211
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||| |
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| T |
1349998 |
ttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtagctccattcgttggacttaagtccatggct |
1350097 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaaaacatggctactattt |
200 |
Q |
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| T |
1350098 |
ggcttcccagttacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaaaacatgcctactattt |
1350197 |
T |
|
| Q |
201 |
tagtttatttgagt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
1350198 |
tagtttatttgagt |
1350211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1383572 - 1383755
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383572 |
ttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
1383671 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaa |
184 |
Q |
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||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1383672 |
ggcttcccagttacaaaggttaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaaa |
1383755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1389677 - 1389860
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389677 |
ttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
1389776 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaa |
184 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1389777 |
ggcttcccagttacaaaggttaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaaa |
1389860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1393609 - 1393791
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
| |
|
|||||||||||| || ||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393609 |
ttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
1393708 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaa |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1393709 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
1393791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1357953 - 1358163
Alignment:
| Q |
1 |
ttcctctatgatgtcgtcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtccatggct |
100 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1357953 |
ttcctctatgatttcctcttcagctatgactacagttaaccgcgcctcttcggtacaatccggcgcggtggctccattcgttggactcaagtccatggct |
1358052 |
T |
|
| Q |
101 |
ggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaaa--aacatggctactat |
198 |
Q |
| |
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||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | | ||||||| |
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| T |
1358053 |
ggcttcccagttacaaaggtcaacaaggacattacctctattacaagcaatggtggaagagtaaactgcatgcaggtgagaaaaataataggcctactat |
1358152 |
T |
|
| Q |
199 |
tttagtttatt |
209 |
Q |
| |
|
||||||||||| |
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|
| T |
1358153 |
tttagtttatt |
1358163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 7006346 - 7006402
Alignment:
| Q |
121 |
caacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggt |
177 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| |
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|
| T |
7006346 |
caacaatgacattacctccatcacaagcaatggtggaagagtgaactgtatgcaggt |
7006402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 7009427 - 7009483
Alignment:
| Q |
121 |
caacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggt |
177 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||| |
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|
| T |
7009427 |
caacaatgacattacctccattgcaagcaatggtggaagagtgaactgtatgcaggt |
7009483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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