View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_low_11 (Length: 234)
Name: NF2595_low_11
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_11 |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 14887817 - 14887961
Alignment:
| Q |
90 |
aacttctcatagtgtatttttacttgtaaataaacatatttgaacactggcatcacgatatatgtgatttgttaagatttacatgtggaactttggaagg |
189 |
Q |
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| T |
14887817 |
aacttctcatagtgtatttttacttgtaaataaacatatttgaacaccggcatcatgatatatgtgatttgttaagatttacatgtggaactttggaagg |
14887916 |
T |
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| Q |
190 |
attcagtcactttcaaccatattactataaaaggaattgaccaaa |
234 |
Q |
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| T |
14887917 |
attcagtcactttcaaccatattaccataaaaggaattggccaaa |
14887961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 14904754 - 14904833
Alignment:
| Q |
155 |
gatttgttaagatttacatgtggaactttggaaggattcagtcactttcaaccatattactataaaaggaattgaccaaa |
234 |
Q |
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| T |
14904754 |
gatttgttaagatttatatgtgaaactttggaaggattaagccactttcaaccatattaacagaaaaggaattgaccaaa |
14904833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 14904670 - 14904719
Alignment:
| Q |
104 |
tatttttacttgtaaataaacatatttgaacactggcatcacgatatatg |
153 |
Q |
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| T |
14904670 |
tatttttacttgtaaataaacatatctgaacaccggcatcatgatatatg |
14904719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 14887766 - 14887798
Alignment:
| Q |
70 |
ggaaggatgaatacctctataacttctcatagt |
102 |
Q |
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| T |
14887766 |
ggaaggatgaatacctctataacttctcatagt |
14887798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 14903765 - 14903805
Alignment:
| Q |
70 |
ggaaggatgaatacctctataacttctcatagtgtattttt |
110 |
Q |
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| T |
14903765 |
ggaaggatgaatacatctataacttctcatagtatattttt |
14903805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 27240284 - 27240203
Alignment:
| Q |
155 |
gatttgttaagatttacatgtggaactttggaaggattcagtcactttcaaccat--attactataaaaggaattgaccaaa |
234 |
Q |
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| T |
27240284 |
gatttgttaagaattgcatgtgaaactttggaaggattcagccactttcaaccatacattaagagaaaaggaattgaccaaa |
27240203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 27247836 - 27247759
Alignment:
| Q |
157 |
tttgttaagatttacatgtggaactttggaaggattcagtcactttcaaccatattactataaaaggaattgaccaaa |
234 |
Q |
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| T |
27247836 |
tttgttaagaattgtatgtgaaactttggaagcattcagcaactttcaaccatattaacagaaaaggaattgatcaaa |
27247759 |
T |
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