View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2595_low_5 (Length: 296)
Name: NF2595_low_5
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 30203146 - 30203428
Alignment:
| Q |
1 |
tggatgtccccttcttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30203146 |
tggatgtccccttcttgaatctgttgtcctgcgaaattgtttccatcttgatttgagtggaagcttggggaaaaggtgtcgtgatcaaatcaaagacttg |
30203245 |
T |
|
| Q |
101 |
gtacttccaactgatgtagatgaaaattgtgatgatgaagattatttttatttgagcagtctaatggaagatgaaatggatttggattatctattctttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30203246 |
gtacttccaactgatgtagatgaaaattgtgatgatgaagattatttttatttgagcagtctaatggaagatgaaatggatttggattatctattctttt |
30203345 |
T |
|
| Q |
201 |
taaatatgtatgac-nnnnnnnagatttacatgaaaatgataactagatggtgacaaatgttattgataatgttattcctttg |
282 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30203346 |
taaatatgtatgacttttttttagatttacatgaaaatgataactagatggtgacaaatgttattgataatgttattcctttg |
30203428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 30224005 - 30224203
Alignment:
| Q |
8 |
ccccttcttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagacttggtacttc |
107 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||| || |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30224005 |
ccccttcttgaatctcttgtcctgcgagattgtaatcatcttgatttgagtggaagttttgggaaaaggtgtcgtgatcagatcaaagactttgtacttc |
30224104 |
T |
|
| Q |
108 |
caactgatgtagatgaaaattgtgatgatgaa------gattatttttatttgagcagtctaatggaagatgaaatggatttggattatctattcttttt |
201 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||| ||| ||||||||||| ||||| |||| |
|
|
| T |
30224105 |
caacttgtgtagatgaaaattctgatgatgaagatgacgattctttttatttgagaagtctaatggaagatcaaa---atttggattatttattcatttt |
30224201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 30231001 - 30231177
Alignment:
| Q |
8 |
ccccttcttgaatctgttgtcctgcgaaattgtttccatcttgatttgagttgaagcttggggaaaaggtgtcgtgatcaaatcaaagact------tgg |
101 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | ||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| | | |
|
|
| T |
30231001 |
ccccttcttgaatctattgtcctgcgagattgtattcatcttgatttgagtggaagtttggggaaaaggtgttgtgatcagatcaaagactttgtagttg |
30231100 |
T |
|
| Q |
102 |
tacttccaactgatgtagatgaaaattgtgatgatgaa------gattatttttatttgagcagtctaatggaagat |
172 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
30231101 |
tacttccaacttatgtagatgaaaattatgatgatgaagatgacgattctttttatttgagaagtgtaatggaagat |
30231177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University