View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_low_6 (Length: 273)
Name: NF2595_low_6
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 13518996 - 13518775
Alignment:
| Q |
34 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
133 |
Q |
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| T |
13518996 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13518897 |
T |
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| Q |
134 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
233 |
Q |
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| T |
13518896 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13518797 |
T |
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| Q |
234 |
cacaattctcatgtcctgtgtg |
255 |
Q |
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|||||||||||||||||||||| |
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| T |
13518796 |
cacaattctcatgtcctgtgtg |
13518775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 34 - 255
Target Start/End: Complemental strand, 13608529 - 13608308
Alignment:
| Q |
34 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608529 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13608430 |
T |
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| Q |
134 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
233 |
Q |
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| T |
13608429 |
gaggaagttaatatgatttctgaacaactacctttggataaattgaataacaagggtcagtattggattccaacaccttctcaaattctcattggtccta |
13608330 |
T |
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| Q |
234 |
cacaattctcatgtcctgtgtg |
255 |
Q |
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|||||||||||||||||||||| |
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| T |
13608329 |
cacaattctcatgtcctgtgtg |
13608308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 21038468 - 21038397
Alignment:
| Q |
181 |
taacaagggtcagtattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgt |
252 |
Q |
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||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
21038468 |
taacaagggtcagtattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgt |
21038397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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