View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2595_low_7 (Length: 270)
Name: NF2595_low_7
Description: NF2595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2595_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 37237845 - 37237726
Alignment:
| Q |
17 |
atattgaaccaaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagac |
116 |
Q |
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| T |
37237845 |
atattgaaccaaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaagctaacaaataatcatcttaatagcaaaagac |
37237746 |
T |
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| Q |
117 |
aaacctgttctgcaagaatg |
136 |
Q |
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| T |
37237745 |
aaacctgttctgcaagaatg |
37237726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 37237693 - 37237609
Alignment:
| Q |
169 |
tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta |
253 |
Q |
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| T |
37237693 |
tataaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta |
37237609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 33595947 - 33596027
Alignment:
| Q |
172 |
aaccaaattatatgaagcaatatttacttcttctataaatcattcaaaaatgaaaattgagataatcaatgttacttaccta |
253 |
Q |
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| T |
33595947 |
aaccaaattatatgaagcaatatttacttcttatataatgcactc-aaagtccaaattgagacaatcaatgttacttaccta |
33596027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 33595815 - 33595872
Alignment:
| Q |
27 |
aaatttaagctcacaggaagcattgaccttttgtccattctcatatttttgtgaacaa |
84 |
Q |
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| T |
33595815 |
aaatttaagctcacaagaagcattgacctttggtctatttgcatagttttgtgaacaa |
33595872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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