View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2596_high_1 (Length: 537)
Name: NF2596_high_1
Description: NF2596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2596_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 241 - 523
Target Start/End: Original strand, 1026037 - 1026312
Alignment:
| Q |
241 |
cctcactctgaacacaaaagagagtgttaaatcccatatccttttcctcttgagttgaggtattaatttaacactaacatcttgatttttccctttggat |
340 |
Q |
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| T |
1026037 |
cctcactttcaacacaaaagagagtgttaaatcccatatccttttcctcttgag-----gtattaatttaactctaacatcttgatttttccctttggat |
1026131 |
T |
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| Q |
341 |
tttatatattgtgagcaatttgtgatatctaacaagtgacaatagtaaaaggggaaaagaaactcagatattcttgtgaaaaatcaagttcacatataaa |
440 |
Q |
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| T |
1026132 |
tttatatattgtgagcaatttgtgatatctaacaagtgacaatagtaa--ggggaaaagaaactcagatactcttgtgaaaaatcaagttcacatataaa |
1026229 |
T |
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| Q |
441 |
aggaatttcatataaaagtcttaagtctccacctatatttataaaaataacaagttaacaattttatttcttaaactcaaata |
523 |
Q |
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| T |
1026230 |
aggaatttcatataaaagtcttaagtctccacctatatttataaaaataacaagttaacaattttatttcttaaactcaaata |
1026312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 1025808 - 1026002
Alignment:
| Q |
1 |
caataggaggtatttattatgaagaatcatactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttctttctcttctag |
100 |
Q |
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| T |
1025808 |
caatagaaggtatttatgatgaagaatcatactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttctttctcttctag |
1025907 |
T |
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| Q |
101 |
gtatgcagacccatctaggatcttaccacgaagacatttgttgaattagtttatgattaaaagatgtaagaacatatgtatatatgtatgaattc |
195 |
Q |
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| T |
1025908 |
gtatgctgacccatctaggatcttaccacgaagacatttgttgaattagtttatgattaaaagatgtaagaacatatgtatatatgtatgaattc |
1026002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 50613522 - 50613425
Alignment:
| Q |
28 |
catactcaatgaactttgataaaggaagtgggtggatggagcctgataatctccctcgttctttctcttctaggtatgcagacccatctaggatctta |
125 |
Q |
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| T |
50613522 |
catactcaatgaattttgatcatggaacaggttggatggaaccagataatctccctcgttcattttcagctcggtatgctgatccatgttggatctta |
50613425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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