View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2596_low_13 (Length: 203)
Name: NF2596_low_13
Description: NF2596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2596_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 12895133 - 12894999
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
12895133 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacagtaaattggaaattgactattcaagtatgagattcaacga |
12895034 |
T |
|
| Q |
117 |
tgatcaagattgtaacaaacattttaaacaagaag |
151 |
Q |
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| T |
12895033 |
tcatcaagattcttacaaacattgtaaacaagaag |
12894999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 12888070 - 12887936
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||| |
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| T |
12888070 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggtaaattagaaattgactactcaagtatgaaatgcaacga |
12887971 |
T |
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| Q |
117 |
tgatcaagattgtaacaaacattttaaacaagaag |
151 |
Q |
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| T |
12887970 |
tgaccaagattctaacaagatttgtaaacaagaag |
12887936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 12908794 - 12908901
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||| |
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| T |
12908794 |
atcttttagttttccaatacaaaggagggtcagattttcatgtcatcatattagatgatagtaaattagaaattgactattcaagtatgagatgcaacga |
12908893 |
T |
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| Q |
117 |
tgatcaag |
124 |
Q |
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||||||| |
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| T |
12908894 |
cgatcaag |
12908901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 12877278 - 12877412
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
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||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||| |||||| |
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| T |
12877278 |
atcttttagtttttcaatataaaggagggtcagattttcatgtcatcatattagatgatagtaaattagaaatcgactattcaagtatgagatgcaacga |
12877377 |
T |
|
| Q |
117 |
tgatcaagattgtaacaaacattttaaacaagaag |
151 |
Q |
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|| ||||||| |||||| || ||||||||||||| |
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| T |
12877378 |
cgaacaagattctaacaagcactttaaacaagaag |
12877412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 12881304 - 12881170
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| || |||||| |
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| T |
12881304 |
atcttttagttttccaatacaatggaggatccgattttcatgtcattatattagatgatagtaaattagaaattgactattcaaatatgaaatgcaacga |
12881205 |
T |
|
| Q |
117 |
tgatcaagattgtaacaaacattttaaacaagaag |
151 |
Q |
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||| ||||||| |||||| || ||||||||||| |
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| T |
12881204 |
tgaccaagattctaacaagatttgtaaacaagaag |
12881170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 12904228 - 12904100
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||| |
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| T |
12904228 |
atcttttagttttccaatacaaaggagggtccgatttctatgtcattatactagatgatagtaaattggaaattgactattcaagtatgcaatacaacga |
12904129 |
T |
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| Q |
117 |
tgatcaagattgtaacaaacattttaaac |
145 |
Q |
| |
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||| || |||| ||||| |||| ||||| |
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|
| T |
12904128 |
tgaccatgattcaaacaagcattgtaaac |
12904100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 12924393 - 12924259
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || | |||||||| |||||||| ||||||||| || |||| | |
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| T |
12924393 |
atcttttagttttccaatacaaaggagggtccaatttttatgtcattatattagacgatagtaaattagagattgactactcaagtatgcaatgcaacaa |
12924294 |
T |
|
| Q |
117 |
tgatcaagattgtaacaaacattttaaacaagaag |
151 |
Q |
| |
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||| ||||||| ||||| ||| ||||||||||| |
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| T |
12924293 |
tgaccaagattcaaacaagcatcataaacaagaag |
12924259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 12193484 - 12193386
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtatgagattcaacg |
115 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||| | ||||||||||| || ||||||||||||| || ||||| |
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| T |
12193484 |
atcttttagtttttcaatacaatggagggtcagattttcatatcattatattagatgatagtaaattagaaatcgattattcaagtatgaaatgcaacg |
12193386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 21114967 - 21115054
Alignment:
| Q |
17 |
atcttttagttttccaatacaaaggagggtctgattttcatgtcattatattagatgacggcaaattagaaattgactattcaagtat |
104 |
Q |
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|
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| ||||||||||| |
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| T |
21114967 |
atcttttagtttttcaatacaaaggagggtcagattttcatgtcattatatttgatgttagtaaattagaaattgattattcaagtat |
21115054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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