View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2596_low_2 (Length: 482)
Name: NF2596_low_2
Description: NF2596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2596_low_2 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 14356 - 13900
Alignment:
| Q |
20 |
ataaaaccacaggtattgttggtctaggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14356 |
ataaaaccacaggtattgttggtctaggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcc |
14257 |
T |
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| Q |
120 |
tttcggttcaaactcgactagcaaattgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14256 |
tttcggttcaaactcgactagcaaattgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgat |
14157 |
T |
|
| Q |
220 |
ccttatcattactatctcaatctcgaaggtatcaccgttggacaaaaaacggctcagtcaggtcaaaatgatggtaacataatcattgattcaggtacaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
14156 |
ccttatcattactatctcaatctcgaaggtatcaccgttggacaaaaaacggctcagtcaggtcaaactgatggtaatataatcattgattcaggtacaa |
14057 |
T |
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| Q |
320 |
cattgacttatcttgaaccaaaattttataatgatttcatagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatttac |
419 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14056 |
cattgacgtatcttgaaccaaaattttataacgatttcatagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatttac |
13957 |
T |
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| Q |
420 |
cttttgcttcacctttggagatctaacaaagttccctaatttcgtgtttcatctcac |
476 |
Q |
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| T |
13956 |
cttttgcttcacctttggagatctagcaaagttccctaatttcgtgtttcatttcac |
13900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 471
Target Start/End: Complemental strand, 22379 - 21943
Alignment:
| Q |
35 |
ttgttggtctaggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcctttcggttcaaactc |
134 |
Q |
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|||||||||| ||| ||| ||| | || ||||||||||||||||| || || ||||||| |||||||| ||||||||||||||| ||| |||||| |
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| T |
22379 |
ttgttggtcttggagcaggaccactatcactagtttcacaactaggtgactcaattggtcacaaattctcctattgtttggttcctccaagtttaaactc |
22280 |
T |
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| Q |
135 |
gactagcaaattgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgatccttatcattactat |
234 |
Q |
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| T |
22279 |
aattagcaaaatgaaatttggagatgaagcaattataaaagataatggcgttgtgtctactcccctcataatcaaatcttcaaatccttcttattacttc |
22180 |
T |
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| Q |
235 |
ctcaatctcgaaggtatcaccgttggacaaaaaacggctcagtcaggtcaaaatgatggtaacataatcattgattcaggtacaacattgacttatcttg |
334 |
Q |
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|||||||||||||| |||||| | ||||||||||| | | || |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
22179 |
ctcaatctcgaaggcatcaccatcggacaaaaaactgttgagacaggtcgaaccgatggtaacataatcattgattcagggacaacattgacgtatcttg |
22080 |
T |
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| Q |
335 |
aaccaaaattttataatgatttcatagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatttaccttttgcttcacctt |
434 |
Q |
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||| ||| ||||| |||||||| ||||||| | ||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
22079 |
aacaaaacttttacaatgatttggtagcttccttaaagggagttattggtgttgaggaagtgaaagatcctccatccccatataccttttgcttcacctt |
21980 |
T |
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| Q |
435 |
tggagatctaacaaagttccctaatttcgtgtttcat |
471 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
21979 |
tggagatataacaaagttccctaattttgtgtttcat |
21943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 35 - 337
Target Start/End: Original strand, 41299 - 41601
Alignment:
| Q |
35 |
ttgttggtctaggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcctttcggttcaaactc |
134 |
Q |
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|||||||| ||||| ||| |||||||| |||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
41299 |
ttgttggtttaggagcaggaccattgtcactagtttcgcaactaggtcattctatcggtcgaaaattctcgtattgtttggttccttttggttcaaactc |
41398 |
T |
|
| Q |
135 |
gactagcaaattgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgatccttatcattactat |
234 |
Q |
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|||||| ||||||| ||||| ||||| ||| ||||| || |||| ||||||||||||||||| || ||||| || ||| || | ||||| |
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| T |
41399 |
gactagtaaattgacgtttgggaatcaatcaactataacgggtaatgaagttgtgtctactcccctcataatcaaatctcttgaaccaactttttacttc |
41498 |
T |
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| Q |
235 |
ctcaatctcgaaggtatcaccgttggacaaaaaacggctcagtcaggtcaaaatgatggtaacataatcattgattcaggtacaacattgacttatcttg |
334 |
Q |
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| || ||||||||||| || ||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
41499 |
gttaacctcgaaggtattactattggacaaaaaacaattcagacaggtcaaatcgatggcaacataatcattgattcagggacaacgttgacgtatcttg |
41598 |
T |
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| Q |
335 |
aac |
337 |
Q |
| |
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||| |
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| T |
41599 |
aac |
41601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 35 - 416
Target Start/End: Complemental strand, 26464554 - 26464170
Alignment:
| Q |
35 |
ttgttggtctaggactagggccattgtccctagtttcacaactaggcgattctattggtcgaaaattctcttattgtttggttcctttcggttcaaactc |
134 |
Q |
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|||||||||||||| ||| ||||| || ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26464554 |
ttgttggtctaggagcaggaccattttcactagtttcacaactaggtcattccatcggtcgaaaattctcttattgtttggttcctttcggttcaaactc |
26464455 |
T |
|
| Q |
135 |
gactagcaaattgaaatttggagatcaagcaattataaaaggcaatggtgttgtgtctactccccttatgatcaagtcatctgatccttatcattactat |
234 |
Q |
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||||| ||| | || ||||| | ||| ||| ||||| || || | |||||||||||||| || || ||||| || ||| | | |||||| |
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| T |
26464454 |
aactagtaaactcaagtttgggaaccaatcaactataacgggtaacgaagttgtgtctactccactcataatcaaatctcttgaacaaactttttactac |
26464355 |
T |
|
| Q |
235 |
ctcaatctcgaaggtatcaccgttg---gacaaaaaacggctcagtcaggtcaaaatgatggtaacataatcattgattcaggtacaacattgacttatc |
331 |
Q |
| |
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|| || || |||||||| || ||| |||||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||| |||||| |||| |
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| T |
26464354 |
cttaaccttgaaggtattactattggtcgacaaaaaacaattcagacaggtcaaattgatggcaacataatcattgattcagggacagcattgatgtatc |
26464255 |
T |
|
| Q |
332 |
ttgaaccaaaattttataatgatttcatagcttcggtgaagggagttattggtgtagaggaagtaaaagatcctccatcaccatt |
416 |
Q |
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| |||| | |||| ||||||| ||||||||||||||| |||||||| | | |||||||| ||||| |||||| ||||| |
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| T |
26464254 |
tcgaacaaccctttttcgatgattttttagcttcggtgaaggaagttattgatattgaggaagtggaagatattccatctccatt |
26464170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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