View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2596_low_6 (Length: 348)
Name: NF2596_low_6
Description: NF2596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2596_low_6 |
 | |
|
| [»] scaffold0045 (3 HSPs) |
| | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0045 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 32805 - 32494
Alignment:
| Q |
26 |
cttatcaattgagttgagctcacggaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaagacaaagttttagt |
125 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32805 |
cttatcaattgagttgagttcacagaaacgattattctcgcaatgttgttgtagaagtgcaatttaaaatcatgaatggaatgtaagacaaagttttagt |
32706 |
T |
|
| Q |
126 |
ataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagaga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32705 |
ataccctcaattttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagaga |
32606 |
T |
|
| Q |
226 |
gacaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32605 |
gacaatgttgtctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattt |
32506 |
T |
|
| Q |
326 |
tcagcttttctt |
337 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32505 |
tcagcttttctt |
32494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 323
Target Start/End: Complemental strand, 25480 - 25298
Alignment:
| Q |
141 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25480 |
ttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatatatatccagcagctactagagagacaatgttgtctac |
25381 |
T |
|
| Q |
241 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttat |
323 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
25380 |
aacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttat |
25298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 141 - 312
Target Start/End: Complemental strand, 40077 - 39906
Alignment:
| Q |
141 |
ttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttgtctac |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
40077 |
ttagaacaattggatacttagcaagaaggtaaatagcccacatggatgaaagggaagtagacatatatccaccaatcactagagagacaatgttgtctac |
39978 |
T |
|
| Q |
241 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39977 |
aacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgt |
39906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 136 - 323
Target Start/End: Original strand, 4739 - 4926
Alignment:
| Q |
136 |
ttttgttagcacaattggatacttagcaagaaggtaaatagcccaagttgatgcaagggaagtagggatatatccagcagccactagagagacaatgttg |
235 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | | |||||||||||| |||||||||||||||||| |
|
|
| T |
4739 |
tttttttagcacaattggatacttagcaagaaggtatatagcccaagtagatgcaagggaagttgatagatatccagcagctactagagagacaatgttg |
4838 |
T |
|
| Q |
236 |
tctacaacttctttgtcactcaatttatcaccttcaccatcttcaatttgcatcaacccatccattagatcacttgtttcaaccttat |
323 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4839 |
tctacaacttctttgtcactcaatttgtcaccatcatcatcttcaatttgcatcaacccatccattagatcaattgtttccaccttat |
4926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University