View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_high_10 (Length: 426)
Name: NF2600_high_10
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 409
Target Start/End: Complemental strand, 48522155 - 48521788
Alignment:
| Q |
43 |
ttagaacaaatagactattttcctctnnnnnnnnnngagattattttgtctagggtatttaaatgttaaggataacnnnnnnnnnnnnattaaattagtt |
142 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| || |
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| T |
48522155 |
ttagaacaaatagactattttcctctaaagaaaa--gagattattttgtcgagggtatttaaatgttaaggataacttttttttttttgttaaattaatt |
48522058 |
T |
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| Q |
143 |
catttggtaaggatattgtattatac-------ggaatgcaaacattaaaccttcctgtcattccaaagtccaaacagttgatttcaattgcaattactt |
235 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||||| |
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| T |
48522057 |
catttgataaggatattgtattatacagaggtcggaatgcaaacattaaaccttcctgccactccaaagtccaaacaattgattttaattgcaattactc |
48521958 |
T |
|
| Q |
236 |
cattactactttttactccaaatgcaattttatttatgcgtcaatgtgttgtttcttaacccttatannnnnnnnngttcttatttaataaggagactta |
335 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48521957 |
cattactac-ttttactccaaatgcaattttatttatgcgtcaatgtgttgtttcttaacccttata--tttttttgttcttatttaataaggagactta |
48521861 |
T |
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| Q |
336 |
attaaacctcaatgtctctcttaatctttctttttaactctataacctttttaatatttgtgttccagtttctt |
409 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48521860 |
attaaacctcaatgtctctcttaatctttc-ttttaactctataacctttttaatatttgtgttccagtttctt |
48521788 |
T |
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