View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_high_14 (Length: 368)
Name: NF2600_high_14
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 41537606 - 41537253
Alignment:
| Q |
1 |
tcactccaggaaagtacacgctgcataatagcgtcctcctatcccatggaaatcaatctcagattcagcggaatatttctcaagtgaaacccgtcaatct |
100 |
Q |
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| T |
41537606 |
tcactccaggaaagtacacgctgcataatagcgtcctcctatcccatggaaatcaatctcagattcagcggaatatttctcaagtgaaacccgtcaatct |
41537507 |
T |
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| Q |
101 |
acacttcacattgctccaaggtattaaaagccttaaatgtgctccccaatagtatttgttatatttatctgtaatatacatttcttgacaaggcacgcta |
200 |
Q |
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| T |
41537506 |
acactccacattgctccaaggtattaaaagccttaaatgtgctccccaatagtatttgttatatttatctgtaacatacatttcttgacaaggcacgcta |
41537407 |
T |
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| Q |
201 |
tttgagaaaatttacattgagtggaatggatggtatgatgcaattagaaactctagaaatagcaactgaagtaatgtttaacattcgatagannnnnnna |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41537406 |
tttgagaaaatttacattgagaggaatggatggtatgatgcaattagaaactctagaaatagcaactgaagtaatgtttaacattcgatagattttttta |
41537307 |
T |
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| Q |
301 |
aagacatttgatagctgatatataaagtttcaatcagttgtaatttgttattat |
354 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
41537306 |
aagacatttgatagctgacatataaagttccaatcagttgtaatttgttattat |
41537253 |
T |
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