View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_high_15 (Length: 353)

Name: NF2600_high_15
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_high_15
NF2600_high_15
[»] chr1 (2 HSPs)
chr1 (1-225)||(31523601-31523825)
chr1 (260-339)||(31523860-31523939)
[»] scaffold0008 (4 HSPs)
scaffold0008 (1-225)||(51756-51976)
scaffold0008 (264-339)||(51643-51718)
scaffold0008 (2-152)||(64281-64431)
scaffold0008 (264-333)||(64096-64165)
[»] chr2 (3 HSPs)
chr2 (264-339)||(21090128-21090203)
chr2 (264-319)||(37854198-37854253)
chr2 (19-74)||(37853966-37854021)
[»] chr4 (2 HSPs)
chr4 (264-319)||(18096592-18096647)
chr4 (19-74)||(18096360-18096415)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31523601 - 31523825
Alignment:
Q  1 atttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaacaatggcaatacttgcttaccacgaggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523601 atttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaacaatggcaatacttgcttaccacgaggc 31523700  T
Q  101 aagactcaatacaaggaagcggaatctatccggatatacactccttttcttgagctcgatggctgtgttaattgtatgcaaatcatgttcatttgtttgt 200  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31523701 aaaactcaatacaaggaagcggaatctatccggatatacactctttttcttgagctcgatggctgtgttaattttatgcaaatcatgttcatttgtttgt 31523800  T
Q  201 aaactttgactcctctagaatatgc 225  Q
    |||||||||||||||||||||||||    
T  31523801 aaactttgactcctctagaatatgc 31523825  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 31523860 - 31523939
Alignment:
Q  260 gccttagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtgtttttg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523860 gccttagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtgtttttg 31523939  T

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Target: scaffold0008 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 51976 - 51756
Alignment:
Q  1 atttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaacaatggcaatacttgcttaccacgaggc 100  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  51976 atttcctctctgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatttgcgttcggaacaatggctatacttgcttaccacgaggc 51877  T
Q  101 aagactcaatacaaggaagcggaatctatccggatatacactccttttcttgagctcgatggctgtgttaattgtatgcaaatcatgttcatttgtttgt 200  Q
    || ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||    ||||||||||||||| ||| |    
T  51876 aaaactcaatacaaggaagcggaatctatctggatatatactctttttcttgagctctatggctgtgttaattgt----aaatcatgttcatttttttat 51781  T
Q  201 aaactttgactcctctagaatatgc 225  Q
    | |||||   |||||||||||||||    
T  51780 atacttttcttcctctagaatatgc 51756  T

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Target: scaffold0008; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 51718 - 51643
Alignment:
Q  264 tagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtgtttttg 339  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51718 tagttggatttagcatcatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtgtttttg 51643  T

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Target: scaffold0008; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 64431 - 64281
Alignment:
Q  2 tttcctctttgtccagaattatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaacaatggcaatacttgcttaccacgaggca 101  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||  |||||||| | ||||| ||| ||||| | ||||||    
T  64431 tttcctctttgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatttgcagttggaacactagcaattcttacttactatgaggca 64332  T
Q  102 agactcaatacaaggaagcggaatctatccggatatacactccttttcttg 152  Q
    | | |||||||||| ||||||| |||||  ||||| |||||  ||||||||    
T  64331 aaaatcaatacaagaaagcggattctatttggatacacactatttttcttg 64281  T

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Target: scaffold0008; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 64165 - 64096
Alignment:
Q  264 tagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtg 333  Q
    |||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  64165 tagttggatttagcaacatcgggtaaaggagggattggaacattcattggtatatgcatagttagtggtg 64096  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 264 - 339
Target Start/End: Original strand, 21090128 - 21090203
Alignment:
Q  264 tagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatgcatagttagcggtgtttttg 339  Q
    ||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||| ||||    
T  21090128 tagttggatttagcaacatctggtaaaggagggatcggaacttttattggtatatgcatagttagtggtgtatttg 21090203  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 37854198 - 37854253
Alignment:
Q  264 tagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatg 319  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  37854198 tagttggatttagcaacatctggtaaaggaggacttggaacttttattggtatatg 37854253  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 37853966 - 37854021
Alignment:
Q  19 attatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaaca 74  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||  ||||||||    
T  37853966 attatcatccctccagggtgcttacacttgtataccagccatttgcagttggaaca 37854021  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 18096592 - 18096647
Alignment:
Q  264 tagttggatttagcaacatctggaaaaggagggcttggaactttcattggtatatg 319  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  18096592 tagttggatttagcaacatctggtaaaggaggacttggaacttttattggtatatg 18096647  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 18096360 - 18096415
Alignment:
Q  19 attatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaaca 74  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||  ||||||||    
T  18096360 attatcatccctccagggtgcttacacttgtataccagccatttgcagttggaaca 18096415  T

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