View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_high_19 (Length: 319)
Name: NF2600_high_19
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 331333 - 331636
Alignment:
| Q |
1 |
taattttctttcatcaacccaatcagattcatattcttgttcatcttcttgttgtttaacaagaacattgaaaacaaagcgtggaaataataataagaag |
100 |
Q |
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| T |
331333 |
taattttctttcatcaaaccaatcagattcatattcttgttcatcttcttgttgtttaacaagaacattgaaaacaaagcgtggaaataaaaataagaag |
331432 |
T |
|
| Q |
101 |
atgcatcgttctctcatcacagcattgcaagaatctccttcttctaattaccattctcttcctgatcctccctcatgctcagacaatgccacttacttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
331433 |
atgcatcgttctctcatcacagcattgcaagaatctccttcttctaattaccattctcttcctgatcctccctcatgctcagacaatgcgactcacttct |
331532 |
T |
|
| Q |
201 |
ccactccaagaaaccaggtacgtttctcaaatattatgcatgcttttatgatacttattagttatttatttcgtttctttcttggttcttgaaaatgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
331533 |
ccactccaagaaaccaggtacgtttctcaaatattatgcatgcttttatgatacttattagttatttatttcgtttctttcttggttcttgaaaatgtat |
331632 |
T |
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| Q |
301 |
atat |
304 |
Q |
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|||| |
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| T |
331633 |
atat |
331636 |
T |
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