View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_high_2 (Length: 823)

Name: NF2600_high_2
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_high_2
NF2600_high_2
[»] chr3 (15 HSPs)
chr3 (18-761)||(54101836-54102583)
chr3 (759-811)||(4222160-4222212)
chr3 (760-811)||(14339630-14339681)
chr3 (771-812)||(8501577-8501618)
chr3 (759-811)||(30311325-30311377)
chr3 (759-811)||(47454622-47454674)
chr3 (760-811)||(27923048-27923099)
chr3 (760-811)||(29563920-29563971)
chr3 (760-811)||(36720401-36720452)
chr3 (759-810)||(46518647-46518698)
chr3 (760-810)||(17108904-17108954)
chr3 (760-810)||(44069778-44069828)
chr3 (778-811)||(36010780-36010813)
chr3 (779-812)||(49452912-49452945)
chr3 (759-812)||(53412964-53413017)
[»] chr5 (3 HSPs)
chr5 (759-811)||(43442215-43442267)
chr5 (760-810)||(29692392-29692442)
chr5 (759-812)||(30883202-30883255)
[»] chr8 (10 HSPs)
chr8 (759-812)||(30483888-30483941)
chr8 (760-812)||(23361653-23361705)
chr8 (764-811)||(36205219-36205266)
chr8 (759-811)||(33727878-33727930)
chr8 (760-811)||(28783080-28783131)
chr8 (760-811)||(35641906-35641957)
chr8 (761-807)||(4435996-4436042)
chr8 (759-805)||(7286226-7286272)
chr8 (759-808)||(2203511-2203560)
chr8 (759-812)||(6536539-6536592)
[»] scaffold0194 (1 HSPs)
scaffold0194 (760-811)||(13051-13102)
[»] chr4 (9 HSPs)
chr4 (761-811)||(41346968-41347018)
chr4 (759-811)||(38869787-38869839)
chr4 (767-813)||(51969044-51969090)
chr4 (779-812)||(43728434-43728467)
chr4 (762-807)||(53496899-53496944)
chr4 (759-811)||(7292803-7292855)
chr4 (759-811)||(12798703-12798755)
chr4 (759-811)||(30938224-30938276)
chr4 (759-811)||(37109356-37109408)
[»] chr1 (14 HSPs)
chr1 (760-810)||(47720850-47720900)
chr1 (760-810)||(47727842-47727892)
chr1 (759-812)||(9165199-9165252)
chr1 (759-811)||(2799881-2799933)
chr1 (759-811)||(8177187-8177239)
chr1 (763-811)||(15786325-15786373)
chr1 (759-811)||(33700778-33700830)
chr1 (759-811)||(51703798-51703850)
chr1 (760-812)||(52116785-52116837)
chr1 (760-807)||(41508851-41508898)
chr1 (761-811)||(16893415-16893465)
chr1 (761-811)||(51814515-51814565)
chr1 (779-812)||(10150873-10150906)
chr1 (758-811)||(30420328-30420381)
[»] chr2 (9 HSPs)
chr2 (759-811)||(29503290-29503342)
chr2 (759-810)||(16918584-16918635)
chr2 (761-811)||(23465926-23465976)
chr2 (775-811)||(6859317-6859353)
chr2 (759-811)||(12801308-12801360)
chr2 (759-811)||(17737629-17737681)
chr2 (759-811)||(42327400-42327452)
chr2 (778-812)||(33839264-33839298)
chr2 (759-812)||(23230609-23230662)
[»] scaffold0291 (1 HSPs)
scaffold0291 (760-811)||(2475-2526)
[»] chr7 (9 HSPs)
chr7 (759-810)||(18363715-18363766)
chr7 (779-811)||(9183196-9183228)
chr7 (759-811)||(26459415-26459467)
chr7 (761-808)||(21854569-21854616)
chr7 (759-806)||(25021345-25021392)
chr7 (760-811)||(43590927-43590978)
chr7 (761-807)||(20952158-20952204)
chr7 (761-811)||(25590632-25590682)
chr7 (758-811)||(7721387-7721440)
[»] chr6 (6 HSPs)
chr6 (760-811)||(13227163-13227214)
chr6 (759-811)||(24555738-24555790)
chr6 (759-807)||(28363956-28364004)
chr6 (759-802)||(34293830-34293873)
chr6 (759-812)||(3779358-3779411)
chr6 (771-812)||(15951306-15951347)
[»] scaffold0126 (1 HSPs)
scaffold0126 (759-811)||(25352-25404)
[»] scaffold0122 (1 HSPs)
scaffold0122 (759-811)||(6924-6976)
[»] scaffold1367 (1 HSPs)
scaffold1367 (760-811)||(845-896)
[»] scaffold0299 (1 HSPs)
scaffold0299 (760-811)||(11548-11599)
[»] scaffold0118 (1 HSPs)
scaffold0118 (759-812)||(41637-41690)
[»] scaffold0002 (1 HSPs)
scaffold0002 (759-812)||(94975-95028)


Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 18 - 761
Target Start/End: Complemental strand, 54102583 - 54101836
Alignment:
Q  18 tatggaaggctctttttggcaaatcctgatctgcctagaagatttgaattggatacccaattgaacaaggctgataagagcactttttacaccaatgatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54102583 tatggaaggctctttttggcaaatcctgatctgcctagaagatttgaattggatacccaattgaacaaggctgataagagcactttttacaccaatgatc 54102484  T
Q  118 ctgttgttggatatactgattatccatttcttgaaaatgctagctagagatcgcataaactattaagtaagtgttttagaacataatactttcatgtatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54102483 ctgttgttggatatactgattatccatttcttgaaaatgctagctagagatcgcataaactattaagtaagtgttttagaacataatactttcatgtatc 54102384  T
Q  218 aaataaaatgnnnnnnnncaacaccnnnnnnngaattaattgttccagaaaaatgttcttctgaataaataaaagtcaannnnnnnnctttgataaaatt 317  Q
    ||||||||||        |||||||       |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  54102383 aaataaaatgttttttttcaacaccaaaaaaagaattaattgttccagaaaaatgttcttctgaataaataaaagtcaattttttttctttgataaaatt 54102284  T
Q  318 atgtaaatggatgatttaattcatatacattatcggtatcaaagtttaaaaactttattattcatatatattcaataaaaaatcgcatgtaggtgatctt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54102283 atgtaaatggatgatttaattcatatacattatcggtatcaaagtttaaaaactttattattcatatatattcaataaaaaatcgcatgtagatgatctt 54102184  T
Q  418 atagagatatttcacaaactaacataagaatgtgacatcatatgaactaattgaatgcctgggttgaaaaagtttacattgtcagtgtatgttgtataac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54102183 atagagatatttcacaaactaacataagaatgtgacatcatatgaactaattgaatgcctgggttgaaaaagtttacattgtcagtgtatgttgtataac 54102084  T
Q  518 aacaaaactcatatcaaagggtattgagcaatctcattactcaatgacgactcgtttgcttaagcagcgataagtattgtgaagttagtttgttagtaat 617  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54102083 aacaaaactcatatcaaagggtattgagcaatctccttactcaatgacgactcgtttgcttaagcagcgataagtattgtgaagttagtttgttagtaat 54101984  T
Q  618 ccaaagtgtgttacaaattaagtttagttggttagattgtgaatgc----nnnnnnnnnnntcgaacaagccaaaatattgtgaatgcaaaattgatgtg 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  54101983 ccaaagtgtgttacaaattaagtttagttggttagattgtgaatgcaaaaaaaaaaaaaaatcgaacaagccaaaatattgtgaatgcaaaattgatgtg 54101884  T
Q  714 tataaatggtattgttgctatttgtaattcaataatcaatttttaagt 761  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54101883 tataaatggtattgttgctatttgtaattcaataatcaatttttaagt 54101836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 4222160 - 4222212
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||    
T  4222160 agtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttc 4222212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 14339630 - 14339681
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| ||| ||||||||||||||||||||| |||||||||||    
T  14339630 gtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttc 14339681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 812
Target Start/End: Complemental strand, 8501618 - 8501577
Alignment:
Q  771 ttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  8501618 ttgagatctgggagtgtgctcctcctcaaagtttcaggttca 8501577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 30311325 - 30311377
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||| || ||| ||| ||||||||||||||||||||| |||||||||||    
T  30311325 agtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 30311377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 47454674 - 47454622
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||||||| | ||||||||||||||||| | |||||||||||    
T  47454674 agtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttc 47454622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 27923099 - 27923048
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| || |||| |||||||||||||||| ||||||||||||    
T  27923099 gtggtattggcttgggacatggaagtgtgctcctcctcatagtctcaggttc 27923048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 29563920 - 29563971
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||||||| ||| |||||||| |||||| |||||||||||||    
T  29563920 gtggtattggcttgagatctggaagtgtgcttctcctcgaagtctcaggttc 29563971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 36720401 - 36720452
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| ||||||||||||||||||||||| | || ||||||||    
T  36720401 gtggtattggcttgggatatgggagtgtgctcctcctcgaggtttcaggttc 36720452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 810
Target Start/End: Original strand, 46518647 - 46518698
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| || |||||||    
T  46518647 agtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtt 46518698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 760 - 810
Target Start/End: Complemental strand, 17108954 - 17108904
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    |||||||||  | ||||| ||||||||||||||||||||| ||||||||||    
T  17108954 gtggtattgactggagatgtgggagtgtgctcctcctcaaggtctcaggtt 17108904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 760 - 810
Target Start/End: Original strand, 44069778 - 44069828
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    ||||| |||| ||||||| | ||||||||||||||||||| ||||||||||    
T  44069778 gtggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtt 44069828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 778 - 811
Target Start/End: Original strand, 36010780 - 36010813
Alignment:
Q  778 atgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||||||||||||||||| ||||    
T  36010780 atgggagtgtgctcctcctcaaagtctcaagttc 36010813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 812
Target Start/End: Original strand, 49452912 - 49452945
Alignment:
Q  779 tgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||||||||||||| ||||||||||||    
T  49452912 tgggagtgtgctcctcctcaaggtctcaggttca 49452945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Original strand, 53412964 - 53413017
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| |||  |  ||||||||||||||||||||| ||||||||||||    
T  53412964 agtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttca 53413017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 43442215 - 43442267
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  43442215 agtggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggttc 43442267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 760 - 810
Target Start/End: Complemental strand, 29692442 - 29692392
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  29692442 gtggtattggattgggatctgggagtgtgctcctcctcaaagtctcaggtt 29692392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 30883255 - 30883202
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| |||||| |||||    
T  30883255 agtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttca 30883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 30483941 - 30483888
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  30483941 agtggtattggcttgggatatgggagtgtgctcctcctcagagtctcaggttca 30483888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 760 - 812
Target Start/End: Complemental strand, 23361705 - 23361653
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    |||||||||  ||| ||||||||||||||||||||||||| ||||||||||||    
T  23361705 gtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttca 23361653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 764 - 811
Target Start/End: Original strand, 36205219 - 36205266
Alignment:
Q  764 tattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  36205219 tattggtttgagatctgggagtgtgctcctcctcaaggtctcatgttc 36205266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||| |||||||||  ||| ||||||||||||||||| |||||||||||    
T  33727930 agtggtataggtttgagacttggaagtgtgctcctcctcaaggtctcaggttc 33727878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 28783080 - 28783131
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||||||  ||||||||||||||||||||| |||||| ||||    
T  28783080 gtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttc 28783131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 35641957 - 35641906
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||| || ||||||| ||||||||||||||||||| | |||||||||||    
T  35641957 gtggtatcggcttgagatttgggagtgtgctcctcctcgatgtctcaggttc 35641906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 761 - 807
Target Start/End: Original strand, 4435996 - 4436042
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcag 807  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  4435996 tggtattggcttgagacatgggagagtgctcctcctcaaggtctcag 4436042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 759 - 805
Target Start/End: Original strand, 7286226 - 7286272
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctc 805  Q
    ||||||||||||||| ||| |||||||||||||||| | ||||||||    
T  7286226 agtggtattggtttgggatctgggagtgtgctcctctttaaagtctc 7286272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 808
Target Start/End: Original strand, 2203511 - 2203560
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcagg 808  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| ||||||||    
T  2203511 agtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagg 2203560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Original strand, 6536539 - 6536592
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||| ||  | ||||||||||||||||||| ||||||||||||    
T  6536539 agtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttca 6536592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 13102 - 13051
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  13102 gtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttc 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 811
Target Start/End: Complemental strand, 41347018 - 41346968
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  41347018 tggtattggtttgagatctgggagtatgctcctcctcgaagtctcaggttc 41346968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 38869787 - 38869839
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||    
T  38869787 agtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 38869839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 767 - 813
Target Start/End: Original strand, 51969044 - 51969090
Alignment:
Q  767 tggtttgagatatgggagtgtgctcctcctcaaagtctcaggttcat 813  Q
    ||||||||||| ||||||||||||||||||||| || ||||||||||    
T  51969044 tggtttgagatttgggagtgtgctcctcctcaaggtttcaggttcat 51969090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 779 - 812
Target Start/End: Original strand, 43728434 - 43728467
Alignment:
Q  779 tgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||||||||||||||||||||||||||    
T  43728434 tgggagtgtgctcctcctcaaagtctcaggttca 43728467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 762 - 807
Target Start/End: Original strand, 53496899 - 53496944
Alignment:
Q  762 ggtattggtttgagatatgggagtgtgctcctcctcaaagtctcag 807  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||    
T  53496899 ggtattggtttgggacctgggagtgtgctcctcctcaaagtctcag 53496944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 7292855 - 7292803
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| |||  |  |||||||||||||||||||||||||||||||||    
T  7292855 agtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttc 7292803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 12798703 - 12798755
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||||||| |||||||||||| |||||| | || ||||||||    
T  12798703 agtggtattggtttgagatctgggagtgtgctgctcctcgaggtttcaggttc 12798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 30938276 - 30938224
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||| ||| | ||||||||||||||||| | |||||||||||    
T  30938276 agtggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttc 30938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 37109408 - 37109356
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| |||||||||||    
T  37109408 agtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttc 37109356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 760 - 810
Target Start/End: Original strand, 47720850 - 47720900
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  47720850 gtggtattgacttgagatataggagtgtgctcctcctcaaagtctcaggtt 47720900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 760 - 810
Target Start/End: Original strand, 47727842 - 47727892
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  47727842 gtggtattgacttgagatataggagtgtgctcctcctcaaagtctcaggtt 47727892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 9165252 - 9165199
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||    
T  9165252 agtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttca 9165199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 2799881 - 2799933
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||| || ||||||| ||||||||||||||||||||| |||||||||||    
T  2799881 agtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttc 2799933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 8177239 - 8177187
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| || ||||||||    
T  8177239 agtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttc 8177187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 763 - 811
Target Start/End: Complemental strand, 15786373 - 15786325
Alignment:
Q  763 gtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||| ||| ||| ||||||||||||||||||||| |||||||||||    
T  15786373 gtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttc 15786325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 33700830 - 33700778
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| |||  || ||||||||||||||||||||| |||||||||||    
T  33700830 agtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttc 33700778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 51703798 - 51703850
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| |||  || |||||||||||||||||||||||| ||||||||    
T  51703798 agtggtattggcttggaatctgggagtgtgctcctcctcaaagtttcaggttc 51703850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 812
Target Start/End: Complemental strand, 52116837 - 52116785
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    |||||||||| ||| ||  ||||||||||||||||||||| ||||||||||||    
T  52116837 gtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttca 52116785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 807
Target Start/End: Original strand, 41508851 - 41508898
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcag 807  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||||    
T  41508851 gtggtactggtttgggatctgggagtgtgctcctcctcaaggtctcag 41508898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 761 - 811
Target Start/End: Original strand, 16893415 - 16893465
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||| ||||||| ||||||||| ||||||||| | |||||||||||    
T  16893415 tggtattggcttgagatttgggagtgtactcctcctcgaggtctcaggttc 16893465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 761 - 811
Target Start/End: Original strand, 51814515 - 51814565
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||  ||||||| || |||||||||||||||||| |||||||||||    
T  51814515 tggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttc 51814565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 812
Target Start/End: Complemental strand, 10150906 - 10150873
Alignment:
Q  779 tgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||| ||||||||||||||||||||||||    
T  10150906 tgggagtgtactcctcctcaaagtctcaggttca 10150873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 811
Target Start/End: Original strand, 30420328 - 30420381
Alignment:
Q  758 aagtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||| |||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  30420328 aagtggttttggcttgggatataggagtgtgctcctcctcaacatctcaggttc 30420381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 29503290 - 29503342
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||| ||  ||||||||||||||||||||| |||||||||||    
T  29503290 agtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttc 29503342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 759 - 810
Target Start/End: Complemental strand, 16918635 - 16918584
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||| |||||    
T  16918635 agtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggtt 16918584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 761 - 811
Target Start/End: Complemental strand, 23465976 - 23465926
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  23465976 tggtattggtttaggatttgggagtatgctcctcctcaaagtctcaggttc 23465926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 775 - 811
Target Start/End: Complemental strand, 6859353 - 6859317
Alignment:
Q  775 gatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6859353 gatatgggagtgtgctcctcttcaaagtctcaggttc 6859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 12801308 - 12801360
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||| ||||| ||| |||| || |||||||||||||||||||||||||    
T  12801308 agtggtattagtttgggatctgggggtatgctcctcctcaaagtctcaggttc 12801360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 17737681 - 17737629
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||| ||  ||||||||||||||||||||| |||||| ||||    
T  17737681 agtggtattggtttgtgacttgggagtgtgctcctcctcaaggtctcatgttc 17737629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 42327452 - 42327400
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| |||||||||||    
T  42327452 agtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttc 42327400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 778 - 812
Target Start/End: Complemental strand, 33839298 - 33839264
Alignment:
Q  778 atgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    |||||||||||||||||||||| ||||||||||||    
T  33839298 atgggagtgtgctcctcctcaaggtctcaggttca 33839264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 23230662 - 23230609
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    |||||||||| |||| ||  ||||||||||||||||||||||||  ||||||||    
T  23230662 agtggtattgatttgggaactgggagtgtgctcctcctcaaagttccaggttca 23230609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 2526 - 2475
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||||||||    
T  2526 gtggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttc 2475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 759 - 810
Target Start/End: Original strand, 18363715 - 18363766
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggtt 810  Q
    |||||||| || ||||||| ||||||||||||||||||||| ||||||||||    
T  18363715 agtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtt 18363766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 779 - 811
Target Start/End: Complemental strand, 9183228 - 9183196
Alignment:
Q  779 tgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||||||||||||||||||||||||||    
T  9183228 tgggagtgtgctcctcctcaaagtctcaggttc 9183196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 26459467 - 26459415
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||  ||||||||||||||||||||| |||||||||||    
T  26459467 agtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttc 26459415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 808
Target Start/End: Original strand, 21854569 - 21854616
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcagg 808  Q
    ||||||||| | | ||| ||||||||||||||||||||||||||||||    
T  21854569 tggtattggctagggatctgggagtgtgctcctcctcaaagtctcagg 21854616  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 806
Target Start/End: Complemental strand, 25021392 - 25021345
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctca 806  Q
    ||||||||||| ||| ||  ||||||||||||||||||||||||||||    
T  25021392 agtggtattggcttgggacctgggagtgtgctcctcctcaaagtctca 25021345  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 43590927 - 43590978
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| ||  ||||||||||||||||||||| |||||||||||    
T  43590927 gtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttc 43590978  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 761 - 807
Target Start/End: Complemental strand, 20952204 - 20952158
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcag 807  Q
    ||||||||||||| ||  |||||||||||||||||||||| ||||||    
T  20952204 tggtattggtttgggacctgggagtgtgctcctcctcaaaatctcag 20952158  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 761 - 811
Target Start/End: Original strand, 25590632 - 25590682
Alignment:
Q  761 tggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||| ||||||| ||||||||||||||||||| | ||||| |||||    
T  25590632 tggtattggcttgagatctgggagtgtgctcctcctcgaggtctcgggttc 25590682  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 758 - 811
Target Start/End: Original strand, 7721387 - 7721440
Alignment:
Q  758 aagtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||||||||| ||  ||||||||| ||||||||||| |||||| ||||    
T  7721387 aagtggtattggtttgggacctgggagtgtactcctcctcaaggtctcatgttc 7721440  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 13227214 - 13227163
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||    
T  13227214 gtggtattggtatgagatctgggagtgtgctcctcctcgaagtctcaagttc 13227163  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Original strand, 24555738 - 24555790
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||||||||||| | ||||| |||||||||||||  ||||||||||    
T  24555738 agtggtattggtttgagatctcggagtatgctcctcctcaagatctcaggttc 24555790  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 807
Target Start/End: Original strand, 28363956 - 28364004
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcag 807  Q
    ||||||||||||||| ||| || |||||||||||||||||| |||||||    
T  28363956 agtggtattggtttgggatctgcgagtgtgctcctcctcaaggtctcag 28364004  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 802
Target Start/End: Complemental strand, 34293873 - 34293830
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagt 802  Q
    |||||||||||||||  || ||||||||||||||||||||||||    
T  34293873 agtggtattggtttggaatttgggagtgtgctcctcctcaaagt 34293830  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Original strand, 3779358 - 3779411
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||||||  ||||||||||||||| ||||| ||||||| ||||    
T  3779358 agtggtattggcttgagacttgggagtgtgctccttctcaaggtctcagattca 3779411  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 812
Target Start/End: Complemental strand, 15951347 - 15951306
Alignment:
Q  771 ttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||| ||||||||||||||||||||| |||||| |||||    
T  15951347 ttgagatttgggagtgtgctcctcctcaaggtctcatgttca 15951306  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 25404 - 25352
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||||||  ||||||||||||||| ||||| |||||||||||    
T  25404 agtggtattggcttgagacttgggagtgtgctccttctcaaggtctcaggttc 25352  T

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Target: scaffold0122 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 811
Target Start/End: Complemental strand, 6976 - 6924
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    ||||||||||| ||| ||   ||||||||||||||||||||||||||||||||    
T  6976 agtggtattggcttgggactggggagtgtgctcctcctcaaagtctcaggttc 6924  T

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Target: scaffold1367 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Complemental strand, 896 - 845
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| ||| ||||| ||||||||||||| |||||||||||||    
T  896 gtggtattggcttgggatctgggaatgtgctcctcctcgaagtctcaggttc 845  T

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Target: scaffold0299 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 811
Target Start/End: Original strand, 11548 - 11599
Alignment:
Q  760 gtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttc 811  Q
    |||||||||| ||| ||| ||||||||||||||||||| | |||||||||||    
T  11548 gtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttc 11599  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 41690 - 41637
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| ||||||| || |||| ||||||||||| | ||||||||||||    
T  41690 agtggtattggcttgagatctgagagtatgctcctcctcgaggtctcaggttca 41637  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 759 - 812
Target Start/End: Complemental strand, 95028 - 94975
Alignment:
Q  759 agtggtattggtttgagatatgggagtgtgctcctcctcaaagtctcaggttca 812  Q
    ||||||||||| |||  |  ||||||||||||||||||||| ||||||||||||    
T  95028 agtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttca 94975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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