View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_high_20 (Length: 297)
Name: NF2600_high_20
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 48 - 282
Target Start/End: Original strand, 41775263 - 41775497
Alignment:
| Q |
48 |
aagttttcatttcaatgcttgattagaaacagaggaagttgttgtaactaagtttttgtgttgttgactatgttttaggtatgataatgggagcatcaac |
147 |
Q |
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| T |
41775263 |
aagttttcatttcaatgcttgattagaaacagaggaagttgttataactaagtttttgtgttgttgactatgttttaggtatgataatgggagcatcaac |
41775362 |
T |
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| Q |
148 |
atcttctgtattttacaacctaagagtgcgtcatccaacaaaagatgttccaatattggattatgatctagctcttctttttcaacctatgcttatgctt |
247 |
Q |
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| T |
41775363 |
atcttctgtattttacaacctaagagtgcgtcatccaacaaaagatgttccaatattggattatgatctagctcttctttttcaacctatgcttatgctt |
41775462 |
T |
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| Q |
248 |
ggtatcactgttggtgttgctcttagtgttgtttt |
282 |
Q |
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| T |
41775463 |
ggtatcactgttggtgttgctcttagtgttgtttt |
41775497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 41775203 - 41775240
Alignment:
| Q |
11 |
cacagacaccggacacgacactaagagatggccaccga |
48 |
Q |
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| T |
41775203 |
cacagacaccggacacgacactaagacatggccaccga |
41775240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 119 - 282
Target Start/End: Complemental strand, 26958987 - 26958824
Alignment:
| Q |
119 |
gttttaggtatgataatgggagcatcaacatcttctgtattttacaacctaagagtgcgtcatccaacaaaagatgttccaatattggattatgatctag |
218 |
Q |
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| T |
26958987 |
gttttaggtatgataatgggggcatcagcatcatcagtttggtataatttgagagtggctcatccaacaaaacaagtgccaatattagactatgatttgg |
26958888 |
T |
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| Q |
219 |
ctcttctttttcaacctatgcttatgcttggtatcactgttggtgttgctcttagtgttgtttt |
282 |
Q |
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| T |
26958887 |
ctcttttgtttcagccaatgcttatgcttgggattactgttggtgttactctcagtgttgtttt |
26958824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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