View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_high_4 (Length: 650)

Name: NF2600_high_4
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_high_4
NF2600_high_4
[»] chr8 (1 HSPs)
chr8 (13-636)||(4468224-4468849)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 636
Target Start/End: Complemental strand, 4468849 - 4468224
Alignment:
Q  13 gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468849 gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata 4468750  T
Q  113 aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagactgacaaagggttcgttacata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4468749 aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagattgacaaagggttcgttacata 4468650  T
Q  213 cgacgtttatcagtgttcagctccaacgactattacta-ctgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg 311  Q
    | |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468649 ctacgtttatcagtgttcagctccaacgactattactagccgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg 4468550  T
Q  312 ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataaca-aagtgatgtttgaaagtag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4468549 ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataacataagtgatgtttgaaagtag 4468450  T
Q  411 aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468449 aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg 4468350  T
Q  511 cttatataaacaatatttctttacgttttagatcaaacaattaattaagataacgtgaatgtgcgattatcccgacaaatttagatacttcgtacataat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4468349 cttatataaacaatatttctttacgttttagatcaaacaattaattaaaatcacgtgaatgtgcgattatcccgacaaatttagatacttcgtacataat 4468250  T
Q  611 agtattatactaattacacagatact 636  Q
    ||||||||||||||||||||||||||    
T  4468249 agtattatactaattacacagatact 4468224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University