View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2600_high_7 (Length: 556)
Name: NF2600_high_7
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 15 - 539
Target Start/End: Complemental strand, 41538149 - 41537633
Alignment:
| Q |
15 |
caaaggttgaggatagttaaagagaggagtagttgtcagatatattaattaattacttttgtgttgagccatgtgataatctattatagttggttagagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41538149 |
caaaggttgaggatagttaaagagaggagtagttgtcagatatattaattaattacttttgtgttgagccatgtgataatctattatagttggttagagt |
41538050 |
T |
|
| Q |
115 |
tgtctgcctacaaagcattaggtcctacacagcctataggaattagagacttaaatgcttatccaactacactgctagcatgttggctactataaattgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41538049 |
tgtctgcctacaaagcattaggtcctacacagcctataggaattagagacttaaatgcttatccaactacactgctagcatgttggctactataaattgc |
41537950 |
T |
|
| Q |
215 |
attgctaaactagcattggatgcaaaacaaatcaagtcttaaacagctcaaagaacacctttcaaaataaaaaggatgcttcaaacctctgctgctcgaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41537949 |
attgctaaactagcattggatgcaaaacaaatcaagtcttaaacagctcaaagaacacctttcaaaataaaaaggatgcttcaaacctctgctgctcgaa |
41537850 |
T |
|
| Q |
315 |
attctatcaaaaggtgtagagatacatcaaaagctcaaagcaatgtcaatgagacctctaatagaacaccttttgcagaaattaccaatggtacatgctt |
414 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
41537849 |
attctatcaaaaggtgtagagatacat--------caaagcaatgtcaatgagacctctgatagaacaccttttgcagacattaccaatgctacatgctt |
41537758 |
T |
|
| Q |
415 |
tatctttttgctatatcgtttttgccattctaaattctaatcagtgatgtttaaaattactaacttattgtattttacgtttatgtagcaccttccctgt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41537757 |
tatctttttgctatatcgtttttgccattctaaattctaatcagtgctgtttaaaattactaacttattgtattttacgtttatgtagcaccttccctgt |
41537658 |
T |
|
| Q |
515 |
ccactagcagtcgccccgttaagaa |
539 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41537657 |
ccactagcagtcgccccgttaagaa |
41537633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University