View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_1 (Length: 981)

Name: NF2600_low_1
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_1
NF2600_low_1
[»] chr2 (17 HSPs)
chr2 (731-953)||(17281013-17281230)
chr2 (529-710)||(17281228-17281423)
chr2 (11-146)||(17281835-17281970)
chr2 (217-359)||(17281624-17281765)
chr2 (217-359)||(4140698-4140840)
chr2 (345-449)||(17281503-17281607)
chr2 (217-354)||(1551273-1551410)
chr2 (11-140)||(1895506-1895635)
chr2 (11-122)||(1551513-1551624)
chr2 (11-132)||(17375373-17375494)
chr2 (230-352)||(4869901-4870022)
chr2 (261-359)||(17375619-17375717)
chr2 (230-353)||(34660506-34660632)
chr2 (30-80)||(3921684-3921734)
chr2 (33-101)||(4869707-4869775)
chr2 (94-146)||(4140576-4140628)
chr2 (22-90)||(38531146-38531215)
[»] chr4 (9 HSPs)
chr4 (17-140)||(23054131-23054254)
chr4 (11-140)||(53202362-53202491)
chr4 (11-140)||(47518348-47518477)
chr4 (217-359)||(53202568-53202710)
chr4 (217-359)||(47518129-47518271)
chr4 (235-359)||(23053914-23054038)
chr4 (11-71)||(24957572-24957632)
chr4 (17-87)||(6410093-6410164)
chr4 (23-66)||(55728934-55728977)
[»] chr5 (16 HSPs)
chr5 (11-140)||(7766902-7767031)
chr5 (231-359)||(7766683-7766811)
chr5 (217-355)||(18697228-18697366)
chr5 (217-359)||(41355224-41355366)
chr5 (17-140)||(27169985-27170109)
chr5 (11-132)||(18697029-18697152)
chr5 (230-348)||(7272086-7272204)
chr5 (238-353)||(26657029-26657147)
chr5 (238-353)||(26928617-26928735)
chr5 (30-140)||(41355443-41355553)
chr5 (261-353)||(6030074-6030166)
chr5 (34-101)||(7271893-7271960)
chr5 (33-101)||(6030323-6030391)
chr5 (33-101)||(26656827-26656895)
chr5 (33-101)||(26928414-26928482)
chr5 (402-440)||(15954968-15955006)
[»] chr6 (4 HSPs)
chr6 (11-122)||(20740674-20740785)
chr6 (11-140)||(21881563-21881692)
chr6 (230-356)||(21881783-21881909)
chr6 (225-359)||(20740897-20741031)
[»] chr1 (8 HSPs)
chr1 (30-140)||(34655070-34655180)
chr1 (230-353)||(616017-616140)
chr1 (11-140)||(34118068-34118199)
chr1 (230-359)||(34118287-34118416)
chr1 (29-140)||(39708919-39709029)
chr1 (230-352)||(39708560-39708685)
chr1 (11-93)||(11407928-11408011)
chr1 (33-101)||(615823-615891)
[»] chr8 (4 HSPs)
chr8 (11-140)||(10408921-10409050)
chr8 (266-359)||(10409175-10409268)
chr8 (11-131)||(5994726-5994846)
chr8 (11-93)||(6444131-6444214)
[»] chr3 (1 HSPs)
chr3 (230-353)||(18269533-18269656)
[»] chr7 (2 HSPs)
chr7 (12-130)||(3302672-3302790)
chr7 (233-355)||(3302893-3303018)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 6e-89; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 731 - 953
Target Start/End: Complemental strand, 17281230 - 17281013
Alignment:
Q  731 tcaaggtttcttagtgatttatgttttagccggcctattgtagctcatggtgttatctctcttgactctctgacaattggaattagagtcataattcagt 830  Q
    |||||||||||| |||||||||||||   | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17281230 tcaaggtttcttggtgatttatgtttatactggcctattgtagctcatggtgttatctctcttgactctccgacaattggaattagagtcataattcagt 17281131  T
Q  831 taatttggtttagaagtggcggtagattcaagtgtacttgatcaaatacagtgaagtggaagattcatattatacttgaaaatgagattgttggagttaa 930  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||||||||||||||||||||||    
T  17281130 taatttggttgagaagtggcggtagattcaagtgtacttgatcaaata-----tagtggaagattcatattatatttgaaaatgagattgttggagttaa 17281036  T
Q  931 gttaagtgtgaatcaatagtgtt 953  Q
    |||||||||||||||||||||||    
T  17281035 gttaagtgtgaatcaatagtgtt 17281013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 529 - 710
Target Start/End: Complemental strand, 17281423 - 17281228
Alignment:
Q  529 ttcaattataattgttttatgtcctcaaaaattgatttctcataaaaatgctaaacataatttttagagttagaattgtttttgaca-------aa---- 617  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||        
T  17281423 ttcaagtataattgttttaagtcctcaaaaattgatttctcataaaaatgctaaacataatttttagagttagaattgtttttgacacttgtaaaatact 17281324  T
Q  618 ---aagaattctaaaagtgaagctaaacacgtacaactatgaataatctaataacgaataaatatgaaagatgactcatatattgaatatttttca 710  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17281323 tccaagaattctaaaagtgaagctaaacacgtacaactatgaataatctaataacgaaaaaatatgaaagatgactcatatattgaatatttttca 17281228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 17281970 - 17281835
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17281970 catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctgagacct 17281871  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatcaacgat 146  Q
    ||||||| |||| |||||||| ||||||||||||||    
T  17281870 acgaaaaacaaacaaccaccggaaagcatcaacgat 17281835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 17281765 - 17281624
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| |||||||||||||||||| ||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17281765 tttacgacgacatagagcaaccgcacgtcggaaaggtacgacggtgtg-aggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 17281667  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  17281666 cggcagatttggaatttatgcgaggaagaaaggagtacggcgg 17281624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 217 - 359
Target Start/End: Original strand, 4140698 - 4140840
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| |||||||||||||||||| ||||  ||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |    
T  4140698 tttacgacgacatagagcaaccgcacgttagaaaggtacaacagtgcggaggacagagacccttgttgcaccaccatccatttgatctacatgatgacaa 4140797  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    |||| |||||||||||| |||||||||||||| ||||||||||    
T  4140798 cggcggatttggaatttgtgtgaggaagaaagaagtacggcgg 4140840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 17281607 - 17281503
Alignment:
Q  345 aaaggagtacggcggctattttctattggaccactaggtttagaaagaaagaaaggaattgattttgtaaaattgattcggagtaaaagtgatttgtaga 444  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17281607 aaaggagtacgacggctattttctattggaccactaggtttagaaagaaagaaaggaattgatttcttaaaattgattcggagtaaaagtgatttgtaga 17281508  T
Q  445 tgagg 449  Q
    |||||    
T  17281507 tgagg 17281503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 217 - 354
Target Start/End: Complemental strand, 1551410 - 1551273
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| ||||||  |||||||||| ||||||||||||||||    |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  1551410 tttacgacgacggagagcaaccgcacgtcggaaaggtacggtggtgcgaaggacaaagaccctcgtcgcaccaccatccatttgatctacatgatgatga 1551311  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtac 354  Q
    || |||||||||||||| ||||||||||||||||||||    
T  1551310 cgacagatttggaatttgtgtgaggaagaaaggagtac 1551273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 1895506 - 1895635
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||     
T  1895506 catcaccaccatcatgaccgatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgagaccc 1895605  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    || ||||||||| ||||||||| |||||||    
T  1895606 acaaaaaccaaacaaccaccgacaagcatc 1895635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 1551624 - 1551513
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||     
T  1551624 catcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgagaccc 1551525  T
Q  111 acgaaaaccaaa 122  Q
    ||||||| ||||    
T  1551524 acgaaaatcaaa 1551513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 17375373 - 17375494
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||| ||||||||||| ||||| |     
T  17375373 catcaccaccatcgtgatcgatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagagcc 17375472  T
Q  111 acgaaaaccaaaaaaccaccga 132  Q
    |||||||||||| |||||||||    
T  17375473 acgaaaaccaaacaaccaccga 17375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 4869901 - 4870022
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    |||| |||||||||||||||||| |||    |||||||||||||||||||| ||||||||||||||||||||||||||||| | || || | |||||  |    
T  4869901 agagaaaccgtacgtcggaaaggcacggtggtgcggaggacagagaccctcatcgcaccaccatccatttgatctacatgacggcg-cgacggatttaaa 4869999  T
Q  330 atttctgtgaggaagaaaggagt 352  Q
    |||| ||||||||||||||||||    
T  4870000 atttgtgtgaggaagaaaggagt 4870022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 17375619 - 17375717
Alignment:
Q  261 tgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |  || |  |||| |||||| ||||||| | |||||||||||||||    
T  17375619 tgcggaggacatagaccctcgtcgcaccaccatccatttgatccacatgatggcagcgacgaatttagaatttgtgtgaggcaaaaaggagtacggcgg 17375717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 34660506 - 34660632
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatga---tgacgacggcagattt 326  Q
    ||||||| ||||| ||||||||||| |    ||||||||||| |||||||| || ||||||||||||||||||||| ||||    | ||||| | |||||    
T  34660506 agagcaatcgtacatcggaaaggtatggtggtgcggaggacaaagaccctcatcacaccaccatccatttgatctatatgacggcggcgacgacggattt 34660605  T
Q  327 ggaatttctgtgaggaagaaaggagta 353  Q
    ||||||| |||||||||||||||||||    
T  34660606 ggaatttgtgtgaggaagaaaggagta 34660632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 3921684 - 3921734
Alignment:
Q  30 gatccatcaccacctatgttgcgagcaaacataacctccaccactaccaag 80  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  3921684 gatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaag 3921734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 4869707 - 4869775
Alignment:
Q  33 ccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    ||||||||||||||||||| | ||||| ||||||||||| | |||||| |||||||| |||||||||||    
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt 4869775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 4140576 - 4140628
Alignment:
Q  94 caaatagtctgagacctacgaaaaccaaaaaaccaccgaaaagcatcaacgat 146  Q
    |||||||||||||||| |||||||||||| ||||||||  |||||||||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcatcaacgat 4140628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 38531215 - 38531146
Alignment:
Q  22 tcgtgaccgatccatcaccacctatgttgcgagcaaacataacctcca-ccactaccaagcgagaaaaca 90  Q
    |||| |||||||||||||||| |||||||||| |||||| |||||||| |||| ||||||  ||||||||    
T  38531215 tcgtaaccgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaaca 38531146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 23054254 - 23054131
Alignment:
Q  17 caccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacctacgaaa 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||    
T  23054254 caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcagacccacgaaa 23054155  T
Q  117 accaaaaaaccaccgaaaagcatc 140  Q
    |||||| |||||| || |||||||    
T  23054154 accaaacaaccactgacaagcatc 23054131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 53202362 - 53202491
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  53202362 catcaccaccatcgtgaccgatctgtcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgagaccc 53202461  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    |||||||||||| |||||| || |||||||    
T  53202462 acgaaaaccaaacaaccacagacaagcatc 53202491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 47518477 - 47518348
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||     
T  47518477 catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtctgagaccc 47518378  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    | |||||||||| ||||||||| |||||||    
T  47518377 atgaaaaccaaacaaccaccgacaagcatc 47518348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 217 - 359
Target Start/End: Original strand, 53202568 - 53202710
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| ||||| | |||||||||| ||||||||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  53202568 tttacgacgatagagagcaaccgcacgtcggaaaggtacggtggtgcggaggacagtgaccctcgtcgcaccaccatccatttgatctacatgatgacgg 53202667  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
     ||| |||||  ||||| |||||||||||||||||||||||||    
T  53202668 gggcggatttaaaatttgtgtgaggaagaaaggagtacggcgg 53202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 47518271 - 47518129
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| ||||||| |||| ||||| ||||||||||||||      ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  47518271 tttacgacgacaaagagaaaccgcacgtcggaaaggtattgtggtgcggaggacaaagaccctcttcgcaccaccatccatttgatctacatgatgacgg 47518172  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    ||||||||||||||||| |||||| |||||||| |||||||||    
T  47518171 cggcagatttggaatttgtgtgagaaagaaaggggtacggcgg 47518129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 235 - 359
Target Start/End: Complemental strand, 23054038 - 23053914
Alignment:
Q  235 aaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttggaatttc 334  Q
    ||||| ||||||||||| ||||    ||| ||||||| ||||||||  |||||||||||||| ||||||||||||||| || |||  ||||| ||||||     
T  23054038 aaccgcacgtcggaaagatacggtggtgcagaggacaaagaccctctccgcaccaccatccagttgatctacatgatggcggcggtggatttagaatttg 23053939  T
Q  335 tgtgaggaagaaaggagtacggcgg 359  Q
    |||||||| |||| |||||||||||    
T  23053938 tgtgaggatgaaaagagtacggcgg 23053914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 24957632 - 24957572
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccacc 71  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24957632 catcgtcaccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 6410093 - 6410164
Alignment:
Q  17 caccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctcca-ccactaccaagcgagaaa 87  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||    
T  6410093 caccttcgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 6410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 55728934 - 55728977
Alignment:
Q  23 cgtgaccgatccatcaccacctatgttgcgagcaaacataacct 66  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  55728934 cgtgaccgatctatcaccacctacgttgcgagcaaacaaaacct 55728977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 7767031 - 7766902
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||     
T  7767031 catcaccaccattgtggccgatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgagaccc 7766932  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    |||||||||||| ||||||||  |||||||    
T  7766931 acgaaaaccaaacaaccaccggcaagcatc 7766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 231 - 359
Target Start/End: Complemental strand, 7766811 - 7766683
Alignment:
Q  231 gagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttggaa 330  Q
    |||||||| |||||||||||||||||    ||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||    
T  7766811 gagcaaccatacgtcggaaaggtacggtggtgcggaggacaaagaccctcgtcgcaccaccatccattagatctacatgatggcggcggcggatttggaa 7766712  T
Q  331 tttctgtgaggaagaaaggagtacggcgg 359  Q
    ||| |||||||||||||||||||||||||    
T  7766711 tttgtgtgaggaagaaaggagtacggcgg 7766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 18697228 - 18697366
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| ||||||| |||||||||| |||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||     
T  18697228 tttacgacgacaaagagcaaccgcacgtcggaaatgtacggtggtgcggaggacagagaccctcgtcgcaccaccatccatttgatctacgtgatggcgg 18697327  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacg 355  Q
    |||| |||||| ||||| |||||||||||||||||||||    
T  18697328 cggcggatttgaaatttgtgtgaggaagaaaggagtacg 18697366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 41355366 - 41355224
Alignment:
Q  217 tttatgacgacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacga 316  Q
    |||| ||||| | |||||||||   ||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41355366 tttacgacgaaagagagcaaccacgcgtcggaaaggtacgatggtgcggaggacaaagaccctcgtcgcaccaccatccatttgatctacatgatgacga 41355267  T
Q  317 cggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    || || |||| |||||| |||||||||||||||||||| ||||    
T  41355266 cgacaaatttagaatttgtgtgaggaagaaaggagtaccgcgg 41355224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 27170109 - 27169985
Alignment:
Q  17 caccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgag-aaaacaaatcaaatagtctgagacctacgaa 115  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| |||||||| |||||    
T  27170109 caccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaa 27170010  T
Q  116 aaccaaaaaaccaccgaaaagcatc 140  Q
    ||||||| ||||| || ||||||||    
T  27170009 aaccaaacaaccatcggaaagcatc 27169985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 18697029 - 18697152
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccact--accaagcgagaaaacaaatcaaatagtctgagac 108  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||   |||||   | ||||||||||||||||||||||||    
T  18697029 catcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagac 18697128  T
Q  109 ctacgaaaaccaaaaaaccaccga 132  Q
    | |||||||||||| |||||||||    
T  18697129 ccacgaaaaccaaacaaccaccga 18697152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 7272086 - 7272204
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    |||||||||||| ||||||||||||||    |||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||| | ||||||||    
T  7272086 agagcaaccgtatgtcggaaaggtacggtggtgcggaggacagagaccctcatcggaccaccatccatttgatctacatgacggcgacgacggatttgga 7272185  T
Q  330 atttctgtgaggaagaaag 348  Q
    |||| ||||||||||||||    
T  7272186 atttgtgtgaggaagaaag 7272204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 26657029 - 26657147
Alignment:
Q  238 cgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacat---gatgacgacggcagatttggaatttc 334  Q
    ||||||||||||||||||     ||||||||||| ||||| || |||||||||||||||||||||||||||   || ||||||| ||||||||||||||     
T  26657029 cgtacgtcggaaaggtacagtggtgcggaggacaaagaccttcatcgcaccaccatccatttgatctacatgacgacgacgacgacagatttggaatttg 26657128  T
Q  335 tgtgaggaagaaaggagta 353  Q
    |||||||||||||||||||    
T  26657129 tgtgaggaagaaaggagta 26657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 26928617 - 26928735
Alignment:
Q  238 cgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacat---gatgacgacggcagatttggaatttc 334  Q
    ||||||||||||||||||     ||||||||||| ||||| || |||||||||||||||||||||||||||   || ||||||| ||||||||||||||     
T  26928617 cgtacgtcggaaaggtacagtggtgcggaggacaaagaccttcatcgcaccaccatccatttgatctacatgacgacgacgacgacagatttggaatttg 26928716  T
Q  335 tgtgaggaagaaaggagta 353  Q
    |||||||||||||||||||    
T  26928717 tgtgaggaagaaaggagta 26928735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 41355553 - 41355443
Alignment:
Q  30 gatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacctacgaaaaccaaaaaaccac 129  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| || ||| | ||| |||| ||| ||||||    
T  41355553 gatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaagatccacggaaactaaacaaccac 41355454  T
Q  130 cgaaaagcatc 140  Q
    ||  |||||||    
T  41355453 cggcaagcatc 41355443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 6030166 - 6030074
Alignment:
Q  261 tgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttggaatttctgtgaggaagaaaggagta 353  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| |||||| || || |  ||||||||||| |||||||||||||||||||    
T  6030166 tgcgaaggacagagaccctcatcgcaccaccatccatttgatctatatgatggcggcgacgaatttggaatttgtgtgaggaagaaaggagta 6030074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 7271893 - 7271960
Alignment:
Q  34 catcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt 7271960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 6030391 - 6030323
Alignment:
Q  33 ccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    ||||||||||||||||| ||| |||||||||| |||||| | |||||| |||||||| |||||||||||    
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt 6030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 26656827 - 26656895
Alignment:
Q  33 ccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |||||| |||||||| |||||||||||    
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 26928414 - 26928482
Alignment:
Q  33 ccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    |||||||||| ||| ||||||||||||||||||| ||| || |||||| |||||||| |||||||||||    
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt 26928482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 15954968 - 15955006
Alignment:
Q  402 attgattttgtaaaattgattcggagtaaaagtgatttg 440  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  15954968 attgattttgtaaaattgaatcggattaaaagtgatttg 15955006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 20740674 - 20740785
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||     
T  20740674 catcaccaccatcgtgaccaatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgagaccc 20740773  T
Q  111 acgaaaaccaaa 122  Q
    ||||||||||||    
T  20740774 acgaaaaccaaa 20740785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 21881563 - 21881692
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||||| |     
T  21881563 catcaccaccatcgtgaccgatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgagagcc 21881662  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    |||||||||||| ||| ||||| |||||||    
T  21881663 acgaaaaccaaacaacgaccgacaagcatc 21881692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 21881783 - 21881909
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    |||||||| ||||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||||||||  || || |||||||| |    
T  21881783 agagcaactgtacgtcggaaaggtacggtggtgcggaggacatagaccctcgtcgcaccaccatccatttgatctacatgattgcggcgacagatttgta 21881882  T
Q  330 atttctgtgaggaagaaaggagtacgg 356  Q
    |||| || ||||||||||| |||||||    
T  21881883 atttatgagaggaagaaagtagtacgg 21881909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 225 - 359
Target Start/End: Original strand, 20740897 - 20741031
Alignment:
Q  225 gacatagagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagat 324  Q
    |||| ||||||||||   ||||||||||||||    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||  | || |||    
T  20740897 gacagagagcaaccgcctgtcggaaaggtacggtggtgcgaaggatagagaccctcgtcgcaccaccatccatttgatctacatgatgacagcagcggat 20740996  T
Q  325 ttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    ||  ||||| |||||||||||||||||||| ||||    
T  20740997 ttaaaatttgtgtgaggaagaaaggagtacagcgg 20741031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 8e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 34655070 - 34655180
Alignment:
Q  30 gatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacctacgaaaaccaaaaaaccac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| |||||||||||| || |||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaacac 34655169  T
Q  130 cgaaaagcatc 140  Q
    || ||||||||    
T  34655170 cggaaagcatc 34655180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 616017 - 616140
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    ||||||||||||| |||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||  ||||||||    
T  616017 agagcaaccgtacatcggaaaggtacggtggtgcggaggacagagaccctcatcgcaccaccatccatttgatctacatgacggcgacggtggatttgga 616116  T
Q  330 atttctgtgaggaagaaaggagta 353  Q
    |||| |||||||||||||||||||    
T  616117 atttgtgtgaggaagaaaggagta 616140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 34118068 - 34118199
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccac--cactaccaagcgagaaaacaaatcaaatagtctgagac 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||  |||||||||||||||||| |||||||     
T  34118068 catcaccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagat 34118167  T
Q  109 ctacgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    | |||||||| ||| ||||||||  |||||||    
T  34118168 ccacgaaaactaaacaaccaccggcaagcatc 34118199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 230 - 359
Target Start/End: Original strand, 34118287 - 34118416
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    |||||||| | |||||| |||||||||    ||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||  ||||| ||    
T  34118287 agagcaactgcacgtcgaaaaggtacggtggtgcagaggacagagaccctcgtcgcaccaccatctatttgatctacattatgccgacgggggatttaga 34118386  T
Q  330 atttctgtgaggaagaaaggagtacggcgg 359  Q
    |||| |||||||||||||||||||||||||    
T  34118387 atttgtgtgaggaagaaaggagtacggcgg 34118416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 39709029 - 39708919
Alignment:
Q  29 cgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacctacgaaaaccaaaaaacca 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||  |||||| | |||||||||| |||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgagaccca-gaaaaccaaacaacca 39708931  T
Q  129 ccgaaaagcatc 140  Q
    |||| |||||||    
T  39708930 ccgacaagcatc 39708919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 39708685 - 39708560
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacat---gatgacgacggcagattt 326  Q
    |||||||||||||||||||||||||||    ||||||||||| |||||||||| ||||||| |||||||| ||||||||   |||| || |||| |||||    
T  39708685 agagcaaccgtacgtcggaaaggtacggtggtgcggaggacaaagaccctcgttgcaccacaatccattttatctacatgacgatggcggcggcggattt 39708586  T
Q  327 ggaatttctgtgaggaagaaaggagt 352  Q
    | |||||  |||||||||||||||||    
T  39708585 gaaatttgggtgaggaagaaaggagt 39708560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 11408011 - 11407928
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctcca-ccactaccaagcgagaaaacaaat 93  Q
    ||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  11408011 catcaccaccttcgtggccgatccatcaccacttatgttgcgagcaaacataacctccacccaccaccaagagagaaaacaaat 11407928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 615823 - 615891
Alignment:
Q  33 ccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagt 101  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||| |||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt 615891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 10408921 - 10409050
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagacct 110  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||||||| |||||||     
T  10408921 catcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagtttgagaccc 10409020  T
Q  111 acgaaaaccaaaaaaccaccgaaaagcatc 140  Q
    || ||||||||| ||||||| | |||||||    
T  10409021 acaaaaaccaaataaccaccaacaagcatc 10409050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 10409175 - 10409268
Alignment:
Q  266 aggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttggaatttctgtgaggaagaaaggagtacggcgg 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||| | ||||||| |||||||| ||||||    
T  10409175 aggacagagaccctcgtcgcaccaccatccatttgatctacatgatggcggcggcggatttagaatttgtttgaggaaaaaaggagtgcggcgg 10409268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 5994726 - 5994846
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctcca-ccactaccaagcgagaaaacaaatcaaatagtctgagacc 109  Q
    ||||| ||||||| ||| |||||||| | ||| ||||||||||||||||||||| |||| |||| |||||| |||||||||||||||| ||| |||| ||    
T  5994726 catcaccaccatcatgatcgatccattagcac-tatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcc 5994824  T
Q  110 tacgaaaaccaaaaaaccaccg 131  Q
     |||||||||||| || |||||    
T  5994825 cacgaaaaccaaacaatcaccg 5994846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 6444131 - 6444214
Alignment:
Q  11 catcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctcca-ccactaccaagcgagaaaacaaat 93  Q
    ||||| |||| | |||||| |||||| |||||||| ||||||||||||||||||||||| |||| |||||| |||||| |||||    
T  6444131 catcaccacctttgtgaccaatccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaatcaaat 6444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 18269656 - 18269533
Alignment:
Q  230 agagcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatccatttgatctacatgatgacgacggcagatttgga 329  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| | ||||||||    
T  18269656 agagcaaccgtacgtcggaaaggtacggtggtgcggaggacagagaccctcatcgcaccaccattcatttgatctacatgatggcgacgacggatttgga 18269557  T
Q  330 atttctgtgaggaagaaaggagta 353  Q
    |||| ||||||| |||||||||||    
T  18269556 atttgtgtgagggagaaaggagta 18269533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 3302672 - 3302790
Alignment:
Q  12 atcatcaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagcgagaaaacaaatcaaatagtctgagaccta 111  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |||  ||||||||||||||||| | |    
T  3302672 atcaccaccatcgtgatcgatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgagatcca 3302771  T
Q  112 cgaaaaccaaaaaaccacc 130  Q
    ||||||||||| |||||||    
T  3302772 cgaaaaccaaacaaccacc 3302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 3302893 - 3303018
Alignment:
Q  233 gcaaccgtacgtcggaaaggtacgacaatgcggaggacagagaccctcgtcgcaccaccatc---catttgatctacatgatgacgacggcagatttgga 329  Q
    ||||||| ||||||||||||||||   |||| |||| ||||||||||||| |||||||||||   |||||||||||||||||| || || |  ||||  |    
T  3302893 gcaaccgaacgtcggaaaggtacggtgatgcagagggcagagaccctcgttgcaccaccatccgtcatttgatctacatgatggcggcgacgaatttaaa 3302992  T
Q  330 atttctgtgaggaagaaaggagtacg 355  Q
    |||| |||||| ||||||| ||||||    
T  3302993 atttgtgtgagaaagaaagaagtacg 3303018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University