View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2600_low_10 (Length: 470)
Name: NF2600_low_10
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_10 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 6637130 - 6637585
Alignment:
| Q |
1 |
tttactcattcatcaacctaannnnnnnattattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6637130 |
tttactcattcatcaacctaatttttttattattttctattaatgaatgccaatagccggattaaaagtcattttttattatttgtttaacaaagaaatt |
6637229 |
T |
|
| Q |
101 |
tattgggaactattgtgagtgaaatttgggacatagcatatgcggtttttaaaaacatgtatagaggtaaaatatccaaaaatagcatacaataaaaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
6637230 |
tattgggaactattgtgagtgaaatttgggacatagcatatgcggtttttaaaaacatgtatagaggtaaaatatccaaaaatagcatataatcaaaact |
6637329 |
T |
|
| Q |
201 |
aacaatggcaataaaaacctgttctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6637330 |
aacaatggcaataaaaacctgttctttatgacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaaca |
6637429 |
T |
|
| Q |
301 |
tttcaacaaacactaaaatatgacaaaacactctagttacagtatg---acttgttctaatattgcatgatgcat-ttatgtaattttgcaatgtcttca |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
6637430 |
tttcaacaaacactaaaatatgacaaaacactctagttacagtatgacaacttgttctaatattccatgatgcatgttatgtaattttgcaatgtcttca |
6637529 |
T |
|
| Q |
397 |
gctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6637530 |
gctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgc |
6637585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 17898981 - 17899081
Alignment:
| Q |
167 |
gtaaaatatccaaaaatagcatacaataaaaactaacaatggcaataaaaacctgttctttataacaaaagcactagtcataaaatacatcaagtctcca |
266 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17898981 |
gtaaaatatccaaaaatagcatacactaaaaaaaaacaatggcaatataaacttgttcattgtaacaaaaatactagtcataaaatacatcaagtctcca |
17899080 |
T |
|
| Q |
267 |
t |
267 |
Q |
| |
|
| |
|
|
| T |
17899081 |
t |
17899081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 450
Target Start/End: Original strand, 17899129 - 17899204
Alignment:
| Q |
375 |
atgtaattttgcaatgtcttcagctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagtt |
450 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17899129 |
atgtaattttgcactgtcttatgctcttattcttgcagcgtgctcttctgccaattgtttctcaaaccttgtagtt |
17899204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 452
Target Start/End: Original strand, 49956 - 50389
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttg |
128 |
Q |
| |
|
||||||||| |||||| |||| ||| | || ||||| ||| ||||||||||||||||| |||||| |||||| | |||||| |||| ||||||| |
|
|
| T |
49956 |
attattttcaattaatcaatgtcaacaaccatattaacagttttttttaattatttgtttgttaaagaagtttattagaaactatctcgagtcaaatttg |
50055 |
T |
|
| Q |
129 |
ggacatagcatatgcggtttttaa-aaacatgtatagaggtaaaatatccaaaaatagcatacaataaaaactaacaa----tggcaataaaaacctgtt |
223 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||| ||| | |||| || || ||||||||||||| |||| |
|
|
| T |
50056 |
ggacatagcatatgcgttttttaagaaacatgtaaagaggtaaaagatccaaaaatagcacacactcaaaaaaaaaaaaagatggcaataaaaacttgtt |
50155 |
T |
|
| Q |
224 |
ctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataat-aaacatttcaacaaacactaaaatatg |
322 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50156 |
ctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaagctgcaaaatatgcataataaaacatttcaacaaacactaaaatatg |
50255 |
T |
|
| Q |
323 |
acaaaacactctagttacagtatg---acttgttctaatattgcatgatgcat-ttatgtaattttgcaatgtcttcagctcttagtcttgcagcttgct |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50256 |
acaaaacactctagttacagtatgacaacttgttctaatattccatgatgcatgttatgtaattttgcaatgtcttttgctcttagtcttgcagcttgct |
50355 |
T |
|
| Q |
419 |
cttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50356 |
cttctgccaattgtttctcaagccttgtagttgc |
50389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 61 - 334
Target Start/End: Complemental strand, 15425888 - 15425615
Alignment:
| Q |
61 |
attaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttgggacatagcatatgcggttttt--aaaaacat |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||| | | |||| |||||| | |||||| |||| |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
15425888 |
attaaaagtcatttttaattatttatttgatatagaagtttattagaaactatctcgagtcaaatttggcacatagcatatgcgttttttttaaaaacat |
15425789 |
T |
|
| Q |
159 |
gtatagaggtaaaata--tccaaaaatagcatacaataaaaactaacaatggcaataaaaacctgttctttataacaaaagcactagtcataaaatacat |
256 |
Q |
| |
|
||| |||||||||| | |||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
15425788 |
gtaaagaggtaaaaaaaatccaaaaatagcatacgctaaaaaa----aatggcaataaaaacttgttctttgtaacaaaaacactagtcataaaatacat |
15425693 |
T |
|
| Q |
257 |
caagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacactct |
334 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15425692 |
caagtctccatcattatgaagctgcaaaatatgcataataaacatttcaacaaacactataatatgacaaaatactct |
15425615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 12317521 - 12317429
Alignment:
| Q |
247 |
taaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacactctagtta |
339 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
12317521 |
taaaatgcatcaagtcttcctcaatatgaaggtgcaaaatatgcataacaaacatttcaacaaacactaacatatgacgaaacaatccagtta |
12317429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 12317709 - 12317604
Alignment:
| Q |
30 |
ttattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||| | |||||| |||||| | |||||| ||||| |||||| | |
|
|
| T |
12317709 |
ttattttctattaatgaatgccaaaagccatattaaaagtcatttttaattactggtttgataaagaagtttattagaaactatcttgagtcaaatttag |
12317610 |
T |
|
| Q |
130 |
gacata |
135 |
Q |
| |
|
|||||| |
|
|
| T |
12317609 |
gacata |
12317604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 15425950 - 15425895
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattattt |
84 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
15425950 |
attattttctattaataaatgccaacagccatattaaaagtcatttttaattattt |
15425895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 452
Target Start/End: Complemental strand, 12317032 - 12316995
Alignment:
| Q |
415 |
tgctcttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12317032 |
tgctgttctgccaattgtttctcaagccttgtagttgc |
12316995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 28753785 - 28753843
Alignment:
| Q |
30 |
ttattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgttt |
88 |
Q |
| |
|
||||||||| |||||||||||||| | | |||||||||| ||||||||||||||||| |
|
|
| T |
28753785 |
ttattttcttttaatgaatgccaaatggcatattaaaagtcctttttaattatttgttt |
28753843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 117 - 328
Target Start/End: Complemental strand, 29759427 - 29759219
Alignment:
| Q |
117 |
gagtgaaatttgggacatagcatatgcggttttt-aaaaacatgtatagaggtaaaatatccaaaaatagcatacaataaaaactaacaatggcaataaa |
215 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
29759427 |
gagtcaaatttggcacatagcatatgcgtttttttaaaaacatgtaaagaggtaaaaaatccaaaaataggatacactaaaaaa----aatggcaataaa |
29759332 |
T |
|
| Q |
216 |
aacctgttctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacacta |
315 |
Q |
| |
|
||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29759331 |
aacttgttctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaagctgcaaaatatgcataataaacatttcaacaaacacta |
29759232 |
T |
|
| Q |
316 |
aaatatgacaaaa |
328 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29759231 |
taatatgacaaaa |
29759219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 61 - 326
Target Start/End: Complemental strand, 10018354 - 10018092
Alignment:
| Q |
61 |
attaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttgggacatagcatatgcggtttttaaaaacatgt |
160 |
Q |
| |
|
||||||| ||||||| |||||||||||| | |||||| |||||| | |||||| ||||| ||| | |||||||| ||||||| |||||||| || | |
|
|
| T |
10018354 |
attaaaaatcattttcaattatttgtttgataaagaagtttattagaaactatcttgagtcaaactcgggacataacatatgc----tttaaaaaaatat |
10018259 |
T |
|
| Q |
161 |
ata----gaggtaaaatatccaaaaatagcatacaataaaaactaacaatggcaataaaaacctgttctttataacaaaagcactagtcataaaatacat |
256 |
Q |
| |
|
||| ||| ||||| |||||||||||||||| | |||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||| || |
|
|
| T |
10018258 |
atatcatgag-taaaagatccaaaaatagcatatattaaaaa--aacaatggcaataaaaaagtgttctttctaacaaaaacattagtcataaaatatat |
10018162 |
T |
|
| Q |
257 |
caagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaa |
326 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
10018161 |
ttagtctccatcaatactaagctgcaaaatatgcataacagacatttcaacaaacaccaaaatatgacaa |
10018092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 8691560 - 8691657
Alignment:
| Q |
241 |
tagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacactctagtta |
339 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8691560 |
tagtcataaaatacat-aagtctccatcaatatgaaggtgtaaaatatgcataacaaacatttcaacaaacactaaattgtgacaaaacactctagtta |
8691657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 9751335 - 9751258
Alignment:
| Q |
375 |
atgtaattttgcaatgtcttcagctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9751335 |
atgtaattttgcactgtcttctgctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgcagttgc |
9751258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 9751539 - 9751403
Alignment:
| Q |
166 |
ggtaaaatatccaaaaatagcatacaat--aaaaactaacaatggcaataaaaacctgttctttataacaaaagcactagtcataaaatacatcaagtct |
263 |
Q |
| |
|
||||||| ||||||||||||||| || | ||||| ||| |||||||||||||| | ||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
9751539 |
ggtaaaagatccaaaaatagcatccactcaaaaaaaaaaccatggcaataaaaacttattcattgtaacaaaaacattagtcataaaatacatcaagtct |
9751440 |
T |
|
| Q |
264 |
ccatcactatgaagctgcaaaatatgcataataaaca |
300 |
Q |
| |
|
| ||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
9751439 |
ctctcaatatgaaggtgcaaaatatgcataacaaaca |
9751403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 29759544 - 29759489
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattattt |
84 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
29759544 |
attattttctattaatgaatgccaacagccatattaaaagtcatttttaattattt |
29759489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 9751410 - 9751371
Alignment:
| Q |
305 |
aacaaacactaaaatatgacaaaacactctagttacagta |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9751410 |
aacaaacaataaaatatgacaaaacactccagttacagta |
9751371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 117 - 334
Target Start/End: Original strand, 5689779 - 5689993
Alignment:
| Q |
117 |
gagtgaaatttgggacatagcatatgcggttttt-aaaaacatgtatagaggtaaaatatccaaaaatagcatacaataaaaactaacaatggcaataaa |
215 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
5689779 |
gagtcaaatttggcacatagcatatgcgtttttttaaaaacatgtaaagaggtaaaaaatccaaaaatagcatacactcaaaaa----aatggcaataaa |
5689874 |
T |
|
| Q |
216 |
aacctgttctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacacta |
315 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5689875 |
aacttgttctttgtaacaaaaacactattcataaaatacatcaagtttccatcattatgaagctgcaaaatatgcataataaacatttcaacaaacacta |
5689974 |
T |
|
| Q |
316 |
aaatatgacaaaacactct |
334 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
5689975 |
taatatgacaaaatactct |
5689993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 117 - 334
Target Start/End: Complemental strand, 25154511 - 25154293
Alignment:
| Q |
117 |
gagtgaaatttgggacatagcatatgcggtttttaaaaa-catgtatagaggtaaaata----tccaaaaatagcatacaataaaaactaacaatggcaa |
211 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||| ||| || | |||||||| | ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
25154511 |
gagtcaaatttggcacatagcatatgcgttttttaaaaaacatataaaaaggtaaaaaaaaaatccaaaaatagcatacactaaaaa---aaaatggcaa |
25154415 |
T |
|
| Q |
212 |
taaaaacctgttctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaac |
311 |
Q |
| |
|
|| || | |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
25154414 |
tacaagcttgttctttgtaacaaaaacactagtcataaaatacatcaagtctccatcattatgaag-tgcaaaatatacataataaacatttcaagaaac |
25154316 |
T |
|
| Q |
312 |
actaaaatatgacaaaacactct |
334 |
Q |
| |
|
|||| |||||||||||| ||||| |
|
|
| T |
25154315 |
actataatatgacaaaatactct |
25154293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 11079996 - 11079926
Alignment:
| Q |
382 |
tttgcaatgtcttcagctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11079996 |
tttgcactatcttctgctcttagtcttgcagcctgctcttctgccaattgtttctcaagccttgtagttgc |
11079926 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 5689661 - 5689720
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgttt |
88 |
Q |
| |
|
|||||||||||||||||||||| || | || ||||||||||||||||||||||| |||| |
|
|
| T |
5689661 |
attattttctattaatgaatgctaacaaccatattaaaagtcatttttaattattagttt |
5689720 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 11112744 - 11112693
Alignment:
| Q |
402 |
tagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgct |
453 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| || |||||||||||| |
|
|
| T |
11112744 |
tagtcttgcagcttgctcttttgccaattgtagctccagtcttgtagttgct |
11112693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 11124009 - 11123958
Alignment:
| Q |
402 |
tagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgct |
453 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| || |||||||||||| |
|
|
| T |
11124009 |
tagtcttgcagcttgctcttttgccaattgtagctccagtcttgtagttgct |
11123958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 11129870 - 11129818
Alignment:
| Q |
402 |
tagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagttgctg |
454 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||| | ||| |||||||||| |
|
|
| T |
11129870 |
tagtcttgcagcttgttcttttgccaattgttcctccaacctcgtagttgctg |
11129818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 31866577 - 31866782
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttg |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |||||| |||||| | |||||| |||| ||||||| |
|
|
| T |
31866577 |
attattttctattaatgaatgccaacagccatattaaaagtcatttttaattatttgtttgataaagaagtttattagaaactatctcgagtcaaatttg |
31866676 |
T |
|
| Q |
129 |
ggacatagcatatgcg-gtttttaaaaacatgtatagaggtaaaatatccaaaaatagcatacaataaaaactaacaatggcaataaaaacctgttcttt |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||||| ||| |||||||||||||| |||| || ||||||||||| ||| |||||||| |
|
|
| T |
31866677 |
ggacatagcatatgcgtttttttaaaaacatggaaagaggtaaaagatcgaaaaatagcatacacaaaaa---aaaaatggcaataacaacttgttcttt |
31866773 |
T |
|
| Q |
228 |
ataacaaaa |
236 |
Q |
| |
|
||||||||| |
|
|
| T |
31866774 |
ataacaaaa |
31866782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 20743443 - 20743531
Alignment:
| Q |
243 |
gtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaacaaacactaaaatatgacaaaacact |
332 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20743443 |
gtcataaaatacat-aagtctccatcaatatgaaggtataaaatatgcataacatacatttcaacaaacactaaaatatgacaaaacact |
20743531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 449
Target Start/End: Original strand, 20743629 - 20743664
Alignment:
| Q |
414 |
ttgctcttctgccaattgtttctcaagccttgtagt |
449 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20743629 |
ttgctcttttgccaattgtttctcaagccttgtagt |
20743664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 127249 - 127340
Alignment:
| Q |
360 |
ttgcatgatgcattt-atgtaattttgcaatgtcttcagctcttagtcttgcagcttgctcttctgccaattgtttctcaagccttgtagtt |
450 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
127249 |
ttgcatgatgcatgtcatgtaattttgcaatgtcttctgctcttagtcttgtagcctgctcttctgccaattgtttctcaagccttgtagtt |
127340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 126910 - 127067
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttg |
128 |
Q |
| |
|
||||||||||| ||||||||| ||| | || |||||||||| ||||||||||||||||| | ||||||| || || | |||||| |||| ||||||| |
|
|
| T |
126910 |
attattttctagtaatgaatgtcaacaaccatattaaaagtcttttttaattatttgtttgataaagaaacttcttagaaactatctcgagtcaaatttg |
127009 |
T |
|
| Q |
129 |
ggacatagcatatgcggttttt-aaaaacatgtatagaggtaaaatatccaaaaatag |
185 |
Q |
| |
|
||| |||||||||||| ||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
127010 |
ggatatagcatatgcgttttttcaaaaacatgtaaagaggtaaaagatccaaaaatag |
127067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 26640872 - 26640761
Alignment:
| Q |
30 |
ttattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttgg |
129 |
Q |
| |
|
|||||||||||||||||||||||| ||| | | ||||||| |||||||||||||||| | | |||||| |||||| | || ||| ||||| |||||||| |
|
|
| T |
26640872 |
ttattttctattaatgaatgccaaaagctgtaataaaagtaatttttaattatttgtgtgataaagaagtttattagaaattatcttgagttaaatttgg |
26640773 |
T |
|
| Q |
130 |
gacatagcatat |
141 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26640772 |
gacatagcatat |
26640761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 2932002 - 2931927
Alignment:
| Q |
29 |
attattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttatt |
104 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||| | |||||| |||||| |
|
|
| T |
2932002 |
attattttctatcaatgaatgccaacagccatattaaaagtgatttttaattatttgtttgataaagaagtttatt |
2931927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 22442 - 22560
Alignment:
| Q |
208 |
gcaataaaaacctgttctttataacaaaagcactagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatttcaac |
307 |
Q |
| |
|
||||| ||||| |||| ||| |||||||| || ||||||||||||||| ||||| |||| ||| ||||| |||||||||||||| || |||||||| |
|
|
| T |
22442 |
gcaattaaaacttgttttttctaacaaaaacattagtcataaaataca----gtctcaatcaatatcaagctccaaaatatgcataacaattatttcaac |
22537 |
T |
|
| Q |
308 |
aaacactaaaatatgacaaaaca |
330 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
22538 |
aaacacgaaaatatgacaaaaca |
22560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 498153 - 498263
Alignment:
| Q |
30 |
ttattttctattaatgaatgccaatagccggattaaaagtcatttttaattatttgtttaacaaagaaatttattgggaactattgtgagtgaaatttgg |
129 |
Q |
| |
|
||||||||||||||||||||| || |||| ||||||||||||||||||||| | |||| | || || |||||| | || ||| ||||| |||||| | |
|
|
| T |
498153 |
ttattttctattaatgaatgcgaaaagccatattaaaagtcatttttaattactggtttgataatgatgtttattagaaattat--tgagtcaaatttag |
498250 |
T |
|
| Q |
130 |
gacatagcatatg |
142 |
Q |
| |
|
||||||||||||| |
|
|
| T |
498251 |
gacatagcatatg |
498263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 498369 - 498430
Alignment:
| Q |
241 |
tagtcataaaatacatcaagtctccatcactatgaagctgcaaaatatgcataataaacatt |
302 |
Q |
| |
|
||||| |||||||||| |||||||| ||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
498369 |
tagtcttaaaatacataaagtctccctcaatatgaaggtgcaaaatatgcataacaaacatt |
498430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 498672 - 498709
Alignment:
| Q |
415 |
tgctcttctgccaattgtttctcaagccttgtagttgc |
452 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
498672 |
tgctgttctgccaattgtttctcaatccttgtagttgc |
498709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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