View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_11 (Length: 444)

Name: NF2600_low_11
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_11
NF2600_low_11
[»] chr3 (23 HSPs)
chr3 (9-150)||(6941295-6941436)
chr3 (9-150)||(6531050-6531202)
chr3 (319-397)||(7585535-7585613)
chr3 (317-396)||(6523777-6523856)
chr3 (326-429)||(6556973-6557076)
chr3 (235-396)||(7585046-7585207)
chr3 (327-396)||(6523896-6523965)
chr3 (235-394)||(6944633-6944788)
chr3 (327-396)||(6733343-6733412)
chr3 (235-389)||(6782627-6782777)
chr3 (325-396)||(6530818-6530889)
chr3 (327-390)||(6944940-6945003)
chr3 (327-397)||(7585308-7585378)
chr3 (325-390)||(6841872-6841937)
chr3 (326-390)||(6941607-6941671)
chr3 (235-293)||(6410329-6410387)
chr3 (235-293)||(6941520-6941578)
chr3 (50-143)||(6782866-6782968)
chr3 (235-293)||(6733255-6733313)
chr3 (321-429)||(8452313-8452421)
chr3 (320-387)||(6880181-6880248)
chr3 (326-378)||(5247848-5247900)
chr3 (326-382)||(8571251-8571307)
[»] scaffold0425 (1 HSPs)
scaffold0425 (327-396)||(10054-10123)
[»] scaffold2053 (1 HSPs)
scaffold2053 (326-377)||(563-614)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 6941295 - 6941436
Alignment:
Q  9 cacagagagtaatttacctgaagagaagagaaagaagattaattgcatcaccatcacactccaataaataaatcttaacagaatcaccacaatcccaaac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6941295 cacagagagtaatttacctgaagagaagagaaagaagattaattgcatcaccatcacactccaataaataaatcttaacaaaatcaccacaatcccaaac 6941394  T
Q  109 taccatcacaccattccaaacgcagaatccctcttggcctgg 150  Q
    | |||||||||||||||||||||||||||||||||| |||||    
T  6941395 tcccatcacaccattccaaacgcagaatccctcttgacctgg 6941436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 6531202 - 6531050
Alignment:
Q  9 cacagagagtaatttacctgaagagaagagaaagaagattaatt---gcatcaccatcacactccaataaataaatcttaacagaatcaccacaa----- 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||    || |||||||||| ||||||||||||||||||||| |||||| ||||         
T  6531202 cacagagagtaatttacctgaagagaagagaaagaagattaatttaatcaccaccatcacagtccaataaataaatcttaacaaaatcacgacaatcatc 6531103  T
Q  101 ---tcccaaactaccatcacaccattccaaacgcagaatccctcttggcctgg 150  Q
       || ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  6531102 atttctcaaactaccctcacaccattccaaacgcagaatccctcttagcctgg 6531050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 7585535 - 7585613
Alignment:
Q  319 acacaccagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaatc 397  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7585535 acacaccagggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctcctttattattccacaatc 7585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 6523856 - 6523777
Alignment:
Q  317 atacacaccagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  6523856 atacacacaagggatgtgactaattgtatgccaaagctctcctccctccttttcatacttctcctttattattccacaat 6523777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 326 - 429
Target Start/End: Complemental strand, 6557076 - 6556973
Alignment:
Q  326 agggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaatccctaatccccagaagagaaagggagttg 425  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||    |||||||||||||    
T  6557076 agggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctcctttattattccacaatctctaatatccaattcagaaagggagttg 6556977  T
Q  426 ggta 429  Q
    ||||    
T  6556976 ggta 6556973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 396
Target Start/End: Original strand, 7585046 - 7585207
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcattttgtggtcaatcgc-tcaacaaaaatacacaccagggatgt 333  Q
    |||||||||||||| |||||||||| |||||||||  |||| |||||||||||||||||   || | |||  | ||||  ||   |||||   |||||||    
T  7585046 tgttcgtaccttccaaaccaaaaagatttgaccaaatgtgggacccataacatctcattcc-tgcttaatttcatcaattaatccacacattcgggatgt 7585144  T
Q  334 gagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7585145 gagtaattgtatgccaacgctctcctccctccttttcatacttctcctttattatttgacaat 7585207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 6523965 - 6523896
Alignment:
Q  327 gggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  6523965 gggatgtgagtaattgtatgccaacgctctcctccctccttttcatacttctcctttattattccacaat 6523896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 394
Target Start/End: Original strand, 6944633 - 6944788
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcattttgtggtcaat-cgctcaacaaaaatacacaccagggatgt 333  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||   || | ||| || ||||   |    |||||  |||||||    
T  6944633 tgttcgtaccttccaaaccaaaaaggtttgaccaaaagtgggacccataacatctcattcc-tgtttaatgcgatcaatcca----cacactcgggatgt 6944727  T
Q  334 gagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgaca 394  Q
    ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  6944728 gacaaattgtatgccaacgctctcctccctccttttcatacttctcctttattattggaca 6944788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 6733343 - 6733412
Alignment:
Q  327 gggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  6733343 gggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctcctttattattccacaat 6733412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 389
Target Start/End: Complemental strand, 6782777 - 6782627
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcattttgtggtcaatcgctcaacaaaaatacacaccagggatgtg 334  Q
    ||||||||| ||| ||||||||||||||||||||| ||||| ||||||||| |||||||  |   | | ||  ||||  ||    ||||| |||||||||    
T  6782777 tgttcgtacattcagaaccaaaaaggtttgaccaaaagtgggacccataacttctcattccggcctaattccgtcaatcaa----cacacgagggatgtg 6782682  T
Q  335 agtaattgtatgccaatgctctcctccctccttttcatacttctcctttattatt 389  Q
    |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6782681 acaaattgtatgccaacgctctcctccctccttttcatacttctcctttattatt 6782627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 6530889 - 6530818
Alignment:
Q  325 cagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    |||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  6530889 cagggatgtgaccaattgtatgccaacgctctcgtccctccttttcatacttctcctttattattcgacaat 6530818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 6944940 - 6945003
Alignment:
Q  327 gggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattc 390  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6944940 gggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctcctttattattc 6945003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 7585308 - 7585378
Alignment:
Q  327 gggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaatc 397  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  7585308 gggatgtgactaattgtatgccaacactctcctccctccttttcatacttctcctttattattccacaatc 7585378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 6841937 - 6841872
Alignment:
Q  325 cagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattc 390  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  6841937 cagggatgtgactaattgtgtgccaacgctctcctccctccttttcatacttctcctttattattc 6841872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 6941607 - 6941671
Alignment:
Q  326 agggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattc 390  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6941607 agggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctcctttattattc 6941671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 6410387 - 6410329
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcatt 293  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6410387 tgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcatt 6410329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 6941520 - 6941578
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcatt 293  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6941520 tgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcatt 6941578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 6782968 - 6782866
Alignment:
Q  50 attgcatcaccatcacactccaataaataaatctt-aacagaatcaccacaat--------cccaaactaccatcacaccattccaaacgcagaatccct 140  Q
    |||| ||||||| |||||||||||||||||||||| |||| ||||||||||||        ||||||||||| ||||||| |||||||||||||||||||    
T  6782968 attgaatcaccaacacactccaataaataaatctttaacaaaatcaccacaataatcatttcccaaactaccctcacaccgttccaaacgcagaatccct 6782869  T
Q  141 ctt 143  Q
    |||    
T  6782868 ctt 6782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 6733255 - 6733313
Alignment:
Q  235 tgttcgtaccttccgaaccaaaaaggtttgaccaagagtggaacccataacatctcatt 293  Q
    |||||||||||||| |||||||||| |||||||||  |||| |||||||||||||||||    
T  6733255 tgttcgtaccttccaaaccaaaaagatttgaccaaacgtgggacccataacatctcatt 6733313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 429
Target Start/End: Original strand, 8452313 - 8452421
Alignment:
Q  321 acaccagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaatccctaatccccagaagagaaaggg 420  Q
    |||| ||||||||||  |||||||| ||  |||||||||||||||||||  |||||| |||| |||| | |||||||  |||||| || |  | ||||||    
T  8452313 acacaagggatgtgacaaattgtatcccgctgctctcctccctccttttggtacttcaccttaattaatggacaatctttaatccacaaactataaaggg 8452412  T
Q  421 agttgggta 429  Q
    |||||||||    
T  8452413 agttgggta 8452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 6880181 - 6880248
Alignment:
Q  320 cacaccagggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttatta 387  Q
    |||| |||| |||||| |||||||||||||| |||||||| |||||||||  ||||||| ||| ||||    
T  6880181 cacatcaggaatgtgactaattgtatgccaacgctctccttcctccttttggtacttctgcttaatta 6880248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 5247848 - 5247900
Alignment:
Q  326 agggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttct 378  Q
    ||||||||||  |||||||||||||  |||||||||||||||||  |||||||    
T  5247848 agggatgtgacgaattgtatgccaacactctcctccctccttttggtacttct 5247900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 8571307 - 8571251
Alignment:
Q  326 agggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctt 382  Q
    ||||||||||  ||||||||||||| | |||||| ||| ||||| ||||||||||||    
T  8571307 agggatgtgacgaattgtatgccaacgttctccttccttcttttgatacttctcctt 8571251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 10123 - 10054
Alignment:
Q  327 gggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttctcctttattattcgacaat 396  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  10123 gggatgtgactaattgtatgccaaagctctcctccctccttttcatacttctcctttattattccacaat 10054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 614 - 563
Alignment:
Q  326 agggatgtgagtaattgtatgccaatgctctcctccctccttttcatacttc 377  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  614 agggatgtgactaattgtatgccaattctctcctccctccttttcatacttc 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University