View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_15 (Length: 374)

Name: NF2600_low_15
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_15
NF2600_low_15
[»] chr1 (10 HSPs)
chr1 (204-363)||(23735557-23735720)
chr1 (204-363)||(23649932-23650095)
chr1 (204-363)||(23618586-23618750)
chr1 (1-135)||(23618820-23618954)
chr1 (1-135)||(23650165-23650299)
chr1 (1-135)||(23735790-23735924)
chr1 (204-319)||(23626752-23626871)
chr1 (204-319)||(23708478-23708597)
chr1 (44-135)||(23626578-23626672)
chr1 (44-135)||(23708304-23708398)
[»] chr6 (1 HSPs)
chr6 (237-343)||(11842635-11842749)
[»] chr3 (5 HSPs)
chr3 (238-343)||(53286991-53287104)
chr3 (282-345)||(54141896-54141959)
chr3 (28-133)||(54141243-54141351)
chr3 (282-356)||(52806560-52806635)
chr3 (38-134)||(52806782-52806881)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 23735720 - 23735557
Alignment:
Q  204 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||     
T  23735720 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgttatcaaatctcaaatgcaaataggtaactcgaatcatca 23735621  T
Q  300 ctttttaatatcaaccaattgtatgaatgtttttattctagattgtcttactttgttgtctttg 363  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23735620 ctttttaatatcaaccaattgtatggatgtttttattctagattgtcttactttgttgtctttg 23735557  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 23650095 - 23649932
Alignment:
Q  204 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca----ggtaactcgaatcatct 299  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    |||||||||||||||      
T  23650095 actagttgtgctgttggaaattggaggaaaggtgccaggaaccgagtgtctcctcaatcgtcatcaaatctcgaatgcaaataggtaactcgaatcatta 23649996  T
Q  300 ctttttaatatcaaccaattgtatgaatgtttttattctagattgtcttactttgttgtctttg 363  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23649995 ctttttaatatcaaccaattgtatggatgtttttattctagattgtcttactttgttgtctttg 23649932  T

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Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 23618750 - 23618586
Alignment:
Q  204 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatct 299  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||     
T  23618750 actagttgtgctgttggaaattggaggaacgatgccaggaaccgagtgtctccccaatcttcatcaaatctcaaatgcaaataggtaactcgaatcatca 23618651  T
Q  300 ctttttaatatcaaccaattgtatgaatg-tttttattctagattgtcttactttgttgtctttg 363  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23618650 ctttttaatatcaaccaattgtatggatgttttttattctagattgtcttactttgttgtctttg 23618586  T

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Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23618954 - 23618820
Alignment:
Q  1 tgttaattctattgccttcctgagttaataataacttgcagattttctttttattttggaggatgcattgagctttcctcatagttcatgtatttgagag 100  Q
    ||||||||| ||| |||| | ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23618954 tgttaattccatttccttgccgagtagataataacttgcagattttctttttattttggaggatgcagtgagctttcctcatagttcatgtatttgagag 23618855  T
Q  101 attttagttgattctctaacatcattaaacaaccg 135  Q
    |||||||||||||||||||||||||||||||||||    
T  23618854 attttagttgattctctaacatcattaaacaaccg 23618820  T

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Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23650299 - 23650165
Alignment:
Q  1 tgttaattctattgccttcctgagttaataataacttgcagattttctttttattttggaggatgcattgagctttcctcatagttcatgtatttgagag 100  Q
    ||||||||| ||| |||| | ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23650299 tgttaattccatttccttgccgagtagataataacttgcagattttctttttattttggaggatgcagtgagctttcctcatagttcatgtatttgagag 23650200  T
Q  101 attttagttgattctctaacatcattaaacaaccg 135  Q
    |||||||||||||||||||||||||||||||||||    
T  23650199 attttagttgattctctaacatcattaaacaaccg 23650165  T

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Target: chr1; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23735924 - 23735790
Alignment:
Q  1 tgttaattctattgccttcctgagttaataataacttgcagattttctttttattttggaggatgcattgagctttcctcatagttcatgtatttgagag 100  Q
    ||||||||| ||| |||| | ||||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23735924 tgttaattccatttccttgccgagtagataataacttgcagattttctttttattttggaggatgcagcgagctttcctcatagttcatgtatttgagag 23735825  T
Q  101 attttagttgattctctaacatcattaaacaaccg 135  Q
    |||||||||||||||||||||||||||||||||||    
T  23735824 attttagttgattctctaacatcattaaacaaccg 23735790  T

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Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 23626752 - 23626871
Alignment:
Q  204 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatct 299  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||    |||||| || ||| ||||    
T  23626752 actagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatgcaaataggtaaatcaaataatct 23626851  T
Q  300 ctttttaatatcaaccaatt 319  Q
    | ||||||||||||||||||    
T  23626852 cattttaatatcaaccaatt 23626871  T

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Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 23708478 - 23708597
Alignment:
Q  204 actagttgtgctgttggaaattggaggaatggtgccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgc----aggtaactcgaatcatct 299  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||    |||||| || ||| ||||    
T  23708478 actagttgtgctgttggaaattggaggaacggtgccagcaaccgagtgtctccccaatcatcatcaaatctcaaatgcaaataggtaaatcaaataatct 23708577  T
Q  300 ctttttaatatcaaccaatt 319  Q
    | ||||||||||||||||||    
T  23708578 cattttaatatcaaccaatt 23708597  T

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Target: chr1; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 23626578 - 23626672
Alignment:
Q  44 tttctttttattttggaggatgcattgagctttcctcatagttca---tgtatttgagagattttagttgattctctaacatcattaaacaaccg 135  Q
    |||||||||||||||||||||| | |||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  23626578 tttctttttattttggaggatgtagtgagctttcctcatagttgactgtgtatttgagagattttagttgattctctaacatcattaaacaaccg 23626672  T

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Target: chr1; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 23708304 - 23708398
Alignment:
Q  44 tttctttttattttggaggatgcattgagctttcctcatagttca---tgtatttgagagattttagttgattctctaacatcattaaacaaccg 135  Q
    |||||||||||||||||||||| | |||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  23708304 tttctttttattttggaggatgtagtgagctttcctcatagttgactgtgtatttgagagattttagttgattctctaacatcattaaacaaccg 23708398  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 11842749 - 11842635
Alignment:
Q  237 gccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca--------ggtaactcgaatcatctctttttaatatcaaccaattgtatgaatg 328  Q
    ||||| |||||||||||||||||||||||||||||   ||||||||        |||||||| ||||||||||||||||| ||||||||||||||| | |    
T  11842749 gccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacg 11842650  T
Q  329 tttttattctagatt 343  Q
    |||||||||||||||    
T  11842649 tttttattctagatt 11842635  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 53286991 - 53287104
Alignment:
Q  238 ccaggaaccgagtgtctccccaatcgtcatcaaatctcaaatgca--------ggtaactcgaatcatctctttttaatatcaaccaattgtatgaatgt 329  Q
    |||| |||||||||||||||||||||||||||||   ||||||||        |||||||| ||||||||||||||||| ||||||||||||||| | ||    
T  53286991 ccagcaaccgagtgtctccccaatcgtcatcaaagtacaaatgcaaacaaacaggtaactcaaatcatctctttttaatttcaaccaattgtatgtacgt 53287090  T
Q  330 ttttattctagatt 343  Q
    ||||||||||||||    
T  53287091 ttttattctagatt 53287104  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 54141896 - 54141959
Alignment:
Q  282 aggtaactcgaatcatctctttttaatatcaaccaattgtatgaatgtttttattctagattgt 345  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  54141896 aggtaactcaaatcatctctttttaatttcaaccaattgtatgtatgtttttattctagattgt 54141959  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 54141243 - 54141351
Alignment:
Q  28 ataataacttgcagattttctttttattttggaggatgcattgagctttcctcatagtt---catgtatttgagagattttagttgattctctaacatca 124  Q
    |||||| ||||||||||||||||||  ||||||||||||| ||| ||||||||  ||||   | |||||||||||||||||||||||||||| |||||||    
T  54141243 ataataccttgcagattttctttttcgtttggaggatgcaatgatctttcctctgagttgaccgtgtatttgagagattttagttgattctccaacatca 54141342  T
Q  125 ttaaacaac 133  Q
     ||| ||||    
T  54141343 ataagcaac 54141351  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 52806635 - 52806560
Alignment:
Q  282 aggtaactcgaatcatctcttttt-aatatcaaccaattgtatgaatgtttttattctagattgtcttactttgtt 356  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  52806635 aggtacctcaaatcatctcttttttaatatcaaccaattgtatgcatgtttttattctagagtgtcatactttgtt 52806560  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 52806881 - 52806782
Alignment:
Q  38 gcagattttctttttattttggaggatgcattgagctttcctcatagttca---tgtatttgagagattttagttgattctctaacatcattaaacaacc 134  Q
    |||| ||||||||||||||||||||||||| |||||| |||||  | || |   |||||||||||||| ||||||||||||||||||||| ||| |||||    
T  52806881 gcaggttttctttttattttggaggatgcaatgagctgtcctctgaattaactgtgtatttgagagatattagttgattctctaacatcaataagcaacc 52806782  T

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