View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_19 (Length: 329)
Name: NF2600_low_19
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 331348 - 331176
Alignment:
| Q |
1 |
tgatgaaagaaaattatttgacatgttgttggaacttggaactcaactgagttggcaatgcaatctactcttatatagaccccgcaattctctcaaacct |
100 |
Q |
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| T |
331348 |
tgatgaaagaaaattatttgacatgttgttggaacttggaactcaactgagttggcaatgcaatctactcatatatagaccccgcaattctctcaaacct |
331249 |
T |
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| Q |
101 |
tcccattgtttcttatatatagttatttttctataaaaatttcaatattttatttctcaaatcaagtcctttg |
173 |
Q |
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| T |
331248 |
tcccattgtttcttatatatagttatttttctataccaatttcaatattttatttctcaaatcaagtcctttg |
331176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 331146 - 331038
Alignment:
| Q |
203 |
tagtcattgtaaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgggagaatcttagttcgattcttgggagtaacaat |
302 |
Q |
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| T |
331146 |
tagtcattgtaaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgagagaatcttagttcgattcttgggagtaacaat |
331047 |
T |
|
| Q |
303 |
tataagttc |
311 |
Q |
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|||| |||| |
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| T |
331046 |
tataggttc |
331038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 17092851 - 17092892
Alignment:
| Q |
234 |
tgattaatgagcttcaccaaataatgaattgttcgggagaat |
275 |
Q |
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| T |
17092851 |
tgattaatgatcttcaccaaatgatgaattgttcggaagaat |
17092892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 1757630 - 1757694
Alignment:
| Q |
212 |
taaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgggagaatc |
276 |
Q |
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||||||||| |||| | |||| ||||||||||| ||||| ||||||| |||| ||| |||||||| |
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| T |
1757630 |
taaccaaacaattatattcaattgattaatgagtttcacaaaataataaattattcaggagaatc |
1757694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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