View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_22 (Length: 298)
Name: NF2600_low_22
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 22691279 - 22691560
Alignment:
| Q |
1 |
agttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacctaaccagata |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691279 |
agttttaaaatctttaccaatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacctaaccagata |
22691378 |
T |
|
| Q |
101 |
gagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagtgtcatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691379 |
gagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagtgtcatgtttg |
22691478 |
T |
|
| Q |
201 |
cattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctatttttgaccccacaact |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22691479 |
cattaatccaagaatttgttgtatctggaaatttcattccaataaatttacgaaatccgtccctatttttgaccccacaact |
22691560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 22708014 - 22708172
Alignment:
| Q |
1 |
agttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacctaaccagata |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
22708014 |
agttttaaaatctttaccgatatatgtagaatccattcgaacgtataggtcttgtccatgttgtgaagttcttaaatcaataagatcacctaatgagata |
22708113 |
T |
|
| Q |
101 |
gagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatt |
159 |
Q |
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| T |
22708114 |
gagcaaccctttcctgctccaattgggtctaaggatgtatatgttgtgcaagagcaatt |
22708172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 28427164 - 28426976
Alignment:
| Q |
61 |
ttgtgaaattcttaaatcaataagatcacctaaccagatagagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatta |
160 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| || ||||| | |||||||| || || ||| ||||||| ||||||||||| ||||| |
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| T |
28427164 |
ttgtaaaattcttaaatcaataagatcaccaaaccagatggaacaaccactgactgctccatttgcatccaagtatgtataagctgtgcaagaacaattt |
28427065 |
T |
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| Q |
161 |
tttatgcatttgactttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatctggaaatttcattccaataaattt |
249 |
Q |
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| | |||||| ||||| || | ||||||| ||||| |||||||||||||||||| |||| |||||||||||| |||| |||||| |
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| T |
28427064 |
tgaaagcattttgtcttgcaatcgttaagtgtcgtgtttcgattaatccaagaatttgtagtatttggaaatttcatcccaacaaattt |
28426976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 28418556 - 28418468
Alignment:
| Q |
137 |
gtatatgctgtgcaagagcaattatttatgcatttgactttgcattcatcaagtgtcatgtttgcattaatccaagaatttgttgtatc |
225 |
Q |
| |
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||||| ||||||||||| ||||| | | ||||||| |||||| || | ||||||||||||| |||||||||||||||||||||||| |
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| T |
28418556 |
gtataagctgtgcaagaacaattttgcaagcatttggttttgcaatcttgaagtgtcatgtttagattaatccaagaatttgttgtatc |
28418468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 1290826 - 1290668
Alignment:
| Q |
1 |
agttttaaaatctttaccgatatatgccgaatccattcgaacgtataggtcttgtccgtcttgtgaaattcttaaatcaataagatcacctaaccagata |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
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| T |
1290826 |
agttttaaaatctttaccgatatatgtagaatccattcaaacgtataggtcttgtccatgttgtgaagttcttaaatcaataagatcacctaaccagata |
1290727 |
T |
|
| Q |
101 |
gagcaaccctttcctgctccaactgggtctaaggatgtatatgctgtgcaagagcaatt |
159 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
1290726 |
gagcaaccctttcctgctccaattgggtctaaggatgtatatgttgtgcaagagcaatt |
1290668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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