View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_24 (Length: 295)
Name: NF2600_low_24
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 22690668 - 22690955
Alignment:
| Q |
1 |
aaccattgaaactgtgattgaaactgccaatataaacttttttccaggaccatgattcgcatctgcatttatgagttaacggtttaaataagaaattgtt |
100 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
22690668 |
aaccattgaaagtgtgattgaaactggcaatataaacttttttccaggaccatgattcgcatctgcatttatgagttaacagtgtaaataagaaattgtt |
22690767 |
T |
|
| Q |
101 |
attcccaattaaattggatgggataatgttcaaaggtaagaggtaatgtaattttttgaggtaactcaaacccttttagatgaatttcattattttaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |
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| T |
22690768 |
attcccaattaaattggatgggataatgttcaaaggtaagacgtaatgtaattttttgaggtaactcaaactcttttaaatgaattttattatttggatg |
22690867 |
T |
|
| Q |
201 |
attaaaatgtagaattttcaaaatgacgacaatttaagaaggatgttttccaaattaaattagtagagtttcaaatttaatccttaaa |
288 |
Q |
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| T |
22690868 |
attaaaatgtagaatttttaaaatgacgacaatttaagaaggatgttttccaaattaaattagtagaatttcaaatttagtccttaaa |
22690955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22707254 - 22707372
Alignment:
| Q |
1 |
aaccattgaaactgtgattgaaactgccaatataaacttttttccaggaccatgattcgcatctgcatttatgagttaacggtttaaataagaaattgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||| || ||||||| |
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| T |
22707254 |
aaccattgaaactgtgattgaaactgccaatataaacttttttccaggaccatgattcgcatctgcgttaatgagttaacagagaaaagaacaaattgtg |
22707353 |
T |
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| Q |
101 |
attcccaattaaattggat |
119 |
Q |
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|||| |||||||||||||| |
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| T |
22707354 |
attctcaattaaattggat |
22707372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 22707382 - 22707446
Alignment:
| Q |
154 |
ttttgaggtaactcaaacccttttagatgaatttcattattttaatgattaaaatgtagaatttt |
218 |
Q |
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||||||||||||||| | |||||| |||||||||||||| || |||||||||||||| |||||| |
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| T |
22707382 |
ttttgaggtaactcagatcctttttgatgaatttcattacttggatgattaaaatgtaaaatttt |
22707446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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