View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2600_low_28 (Length: 257)

Name: NF2600_low_28
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2600_low_28
NF2600_low_28
[»] chr5 (3 HSPs)
chr5 (16-128)||(13088111-13088222)
chr5 (16-128)||(13016733-13016844)
chr5 (197-246)||(13678767-13678816)
[»] chr4 (3 HSPs)
chr4 (204-247)||(54734621-54734664)
chr4 (175-249)||(53385309-53385383)
chr4 (197-242)||(33283041-33283086)
[»] chr3 (4 HSPs)
chr3 (199-246)||(5834720-5834767)
chr3 (189-232)||(46002588-46002631)
chr3 (207-248)||(35585412-35585453)
chr3 (207-248)||(54718328-54718369)
[»] chr2 (1 HSPs)
chr2 (207-244)||(24127945-24127982)
[»] chr6 (1 HSPs)
chr6 (166-246)||(15500133-15500213)
[»] chr8 (1 HSPs)
chr8 (207-246)||(33472816-33472855)
[»] chr7 (1 HSPs)
chr7 (207-248)||(42273008-42273049)
[»] chr1 (1 HSPs)
chr1 (215-248)||(40371079-40371112)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 13088222 - 13088111
Alignment:
Q  16 cagaagactcaaatttcaaaaactggccatgttaataaatctgatccaacaatagatcggtttactcttgatgattttcggcagagaaagcacaagaaaa 115  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  13088222 cagaagactcaaatttcaaaa-ctagccatgttaataaatctgatccaacaatagatcggtttactcttgatgatttttggtggagaaagcacaagaaaa 13088124  T
Q  116 cgcacttacactt 128  Q
    | |||||||||||    
T  13088123 cacacttacactt 13088111  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 13016844 - 13016733
Alignment:
Q  16 cagaagactcaaatttcaaaaactggccatgttaataaatctgatccaacaatagatcggtttactcttgatgattttcggcagagaaagcacaagaaaa 115  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||    
T  13016844 cagaagactcaaatttcaaaa-ctagccatgttaataaatctgatccaacaatagatcggtttactcttgatgatttttggtggagaaagcgcaagaaaa 13016746  T
Q  116 cgcacttacactt 128  Q
    | |||||||||||    
T  13016745 cacacttacactt 13016733  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 13678767 - 13678816
Alignment:
Q  197 tgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 246  Q
    |||||| ||||||| |||||||||  |||||||| |||||||||||||||    
T  13678767 tgaaatgttagggtcaaggtataaccgtaggggtgtggggtaaaacttcc 13678816  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 54734664 - 54734621
Alignment:
Q  204 ttagggtgaaggtataaatgtaggggtatggggtaaaacttcct 247  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  54734664 ttagggtgaaggtataattgtaggggtatggggtataacttcct 54734621  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 53385309 - 53385383
Alignment:
Q  175 agggtaaaataggcagttcatatgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttccttt 249  Q
    ||||||||||||| ||||||||  |||| | |||||||  ||||| ||||||||||||  ||||||| |||||||    
T  53385309 agggtaaaataggaagttcatacaaaatgtaagggtgagagtatagatgtaggggtataaggtaaaatttccttt 53385383  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 33283041 - 33283086
Alignment:
Q  197 tgaaatattagggtgaaggtataaatgtaggggtatggggtaaaac 242  Q
    ||||||||| |||| |||||||||  ||||||||||||||||||||    
T  33283041 tgaaatattggggtcaaggtataaccgtaggggtatggggtaaaac 33283086  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 5834767 - 5834720
Alignment:
Q  199 aaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 246  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  5834767 aaatattggggtcaaggtataaatgtaggggtgtggggtaaaacttcc 5834720  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 46002588 - 46002631
Alignment:
Q  189 agttcatatgaaatattagggtgaaggtataaatgtaggggtat 232  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  46002588 agttcatatgaaatataggggtgaaggtataaatgtaggggtat 46002631  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 35585412 - 35585453
Alignment:
Q  207 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 248  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  35585412 gggtgaaggtataatagtaggggtatggggtataacttcctt 35585453  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 54718369 - 54718328
Alignment:
Q  207 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 248  Q
    |||| ||||||||||||||||||| ||||||| |||||||||    
T  54718369 gggtcaaggtataaatgtaggggtgtggggtataacttcctt 54718328  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 24127982 - 24127945
Alignment:
Q  207 gggtgaaggtataaatgtaggggtatggggtaaaactt 244  Q
    |||||||||||||||||||||||||||||||| |||||    
T  24127982 gggtgaaggtataaatgtaggggtatggggtataactt 24127945  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 15500213 - 15500133
Alignment:
Q  166 atatatatgagggtaaaataggcagttcatatgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 246  Q
    ||||||| ||||||||||| | || |||||   |||| | ||||  ||||||||| |||||||||||||||||||||||||    
T  15500213 atatatacgagggtaaaattgacaattcatgcaaaatgtaagggaaaaggtataattgtaggggtatggggtaaaacttcc 15500133  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 33472855 - 33472816
Alignment:
Q  207 gggtgaaggtataaatgtaggggtatggggtaaaacttcc 246  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  33472855 gggtaaaggtataaatgtaggggtgtggggtaaaacttcc 33472816  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 42273008 - 42273049
Alignment:
Q  207 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 248  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  42273008 gggtgaaggtacgaatgtaggggtatagggtaaaacttcctt 42273049  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 40371112 - 40371079
Alignment:
Q  215 gtataaatgtaggggtatggggtaaaacttcctt 248  Q
    |||||||||||||||| |||||||||||||||||    
T  40371112 gtataaatgtaggggtgtggggtaaaacttcctt 40371079  T

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