View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_3 (Length: 668)
Name: NF2600_low_3
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 193 - 650
Target Start/End: Original strand, 15136502 - 15136959
Alignment:
| Q |
193 |
gagggctatagctgcacatatatgaatactatatacatacctttataccagacaagaactgagcttcccaagtcctagggtgctgaaaaagaaatcattc |
292 |
Q |
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| T |
15136502 |
gagggctatagctgcacatatatgaatactatatacatacctttataccagacaagaactgagcttcccaagtcctagggtgctgaaaaagaaatcattc |
15136601 |
T |
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| Q |
293 |
tatctatttcaggaaacttttaatatgaaagcattaactaagattacaagaataataataataatctaatttaagcaagaataccatatacatagtttta |
392 |
Q |
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| T |
15136602 |
tatctatttcaggaaacttttaatatgaaagcattaactaagattataagaataataataataatctaatttaagcaagaataccatatacatagtttta |
15136701 |
T |
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| Q |
393 |
ttttactcactgagtctgctgaattatgccatgctgataagaaattaatttcttgatcattaggttctttatatatccacttgtgactatgatctgcagc |
492 |
Q |
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| T |
15136702 |
ttttactcactgagtctgctgaattatgccatgctgataagaaattaatttcttgatcattaggttctttatatatccacttgtgactatgatctgcagc |
15136801 |
T |
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| Q |
493 |
tacttttccaatcaacctgctccataaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaataagtaa |
592 |
Q |
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| T |
15136802 |
tacttttccaatcaacctgctccataaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaactagtaa |
15136901 |
T |
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| Q |
593 |
attaaattaatatgaatttagtagatgctacatagtacatacccttctccatagttat |
650 |
Q |
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| T |
15136902 |
aataaattaatatgaatttagtagatgctacatagtacatacccttctccatagttat |
15136959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 15136357 - 15136446
Alignment:
| Q |
15 |
caaagggagaagagagaaccttgtgaacagctcctaattgaacaacaccttctctaacagcaatgagggctatagtctgcaagatacata |
104 |
Q |
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| T |
15136357 |
caaagggagaagagagaaccttgtgaacagctcctaattgaacaacaccttctctaacagcaatgagggctatagtctgcaagatacata |
15136446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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