View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_30 (Length: 248)
Name: NF2600_low_30
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_30 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 33397172 - 33397417
Alignment:
| Q |
3 |
gagtgaaaagaacaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaagaaatatccttacggcatgtaagtgagaaagaa |
102 |
Q |
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| T |
33397172 |
gagtgaaaaggacaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatggagtatgaagaaatatccttacggcatgtaagtgagaaagaa |
33397271 |
T |
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| Q |
103 |
ttcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatac |
202 |
Q |
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| T |
33397272 |
ttcaaagttggtctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaactcttgtagaaacacacagttcatac |
33397371 |
T |
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| Q |
203 |
acaatagaaaaaaggtggagtcattaacgtagaaatgaccagagag |
248 |
Q |
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| T |
33397372 |
acaatagaaaaaaggtggagtcattaacgtagaaatgaccagagag |
33397417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 27005101 - 27004947
Alignment:
| Q |
94 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
193 |
Q |
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| T |
27005101 |
gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac |
27005002 |
T |
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| Q |
194 |
agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagag |
248 |
Q |
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| T |
27005001 |
agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagag |
27004947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 33708450 - 33708401
Alignment:
| Q |
14 |
acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaag |
63 |
Q |
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| T |
33708450 |
acaaatcaagacaagttaagcgcttcaaactcatcaatgaatcaatgaag |
33708401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 36810353 - 36810249
Alignment:
| Q |
94 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
193 |
Q |
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|||| |||||||||||| |||||||| | ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | ||| |
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| T |
36810353 |
gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac |
36810254 |
T |
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| Q |
194 |
agttc |
198 |
Q |
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||||| |
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| T |
36810253 |
agttc |
36810249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 33714316 - 33714265
Alignment:
| Q |
14 |
acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagta |
65 |
Q |
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| T |
33714316 |
acaaatcaagacaagttaagcgctttaaactcaccaatgaatcaatgaagta |
33714265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 36876237 - 36876290
Alignment:
| Q |
14 |
acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg |
67 |
Q |
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| T |
36876237 |
acaaatcaagacaagttaatcccttcaaactccacaatgaatcaacaaagtatg |
36876290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 36810449 - 36810396
Alignment:
| Q |
14 |
acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg |
67 |
Q |
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|||||||| |||||||||||| |||||||||| |||||||||| |||||||| |
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| T |
36810449 |
acaaatcatgacaagttaatcccttcaaactccccaatgaatcagcgaagtatg |
36810396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 18723764 - 18723712
Alignment:
| Q |
19 |
tcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaaga |
71 |
Q |
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|||||||||||||| | |||||||||| |||||||||||||||||||||||| |
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| T |
18723764 |
tcaagacaagttaagcgcttcaaactcgccaatgaatcaatgaagtatgaaga |
18723712 |
T |
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