View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2600_low_31 (Length: 239)
Name: NF2600_low_31
Description: NF2600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2600_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 31748981 - 31749199
Alignment:
| Q |
3 |
taccaatcattctatcactgttatacaataactcaccttgtttgttgtcagaacaggtttctaccagttggcttttgccaagtctatatttctgtaataa |
102 |
Q |
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| T |
31748981 |
taccaatcattctatcactgttatacaataactcaccttgtttgttgtcagaacaggtttctaccagttggcttttgccaagtctatatttctgtaataa |
31749080 |
T |
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| Q |
103 |
ccagaaaatcaaataagctcaaactcttatagtttttggattcagtgtaggaaaaagattatgatacctgtaaatgacttttaagatggtacaaagtgag |
202 |
Q |
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| T |
31749081 |
ccagaaaatcaaataagctcaaactcttatagtttttggattcagtgtaggaaaaagattatgatacctgtaaatgacttttaagatggtacaaagtgag |
31749180 |
T |
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| Q |
203 |
tcctggaatccccatcacc |
221 |
Q |
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| T |
31749181 |
tcctggaatccccatcacc |
31749199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 18170085 - 18170137
Alignment:
| Q |
43 |
tttgttgtcagaacaggtttctaccagttggcttttgccaagtctatatttct |
95 |
Q |
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| T |
18170085 |
tttgttgtcagagcaggtttctagttgttggcttttcccaagtctatatttct |
18170137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 18170210 - 18170265
Alignment:
| Q |
166 |
atacctgtaaatgacttttaagatggtacaaagtgagtcctggaatccccatcacc |
221 |
Q |
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| T |
18170210 |
atacctgtaaatggctcttgagatggtacaaagtaagtcctggaatttccatcacc |
18170265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 26400227 - 26400193
Alignment:
| Q |
186 |
agatggtacaaagtgagtcctggaatccccatcac |
220 |
Q |
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| T |
26400227 |
agatggtacaaagtgtgtcctggaatccccatcac |
26400193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 30271416 - 30271387
Alignment:
| Q |
186 |
agatggtacaaagtgagtcctggaatcccc |
215 |
Q |
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| T |
30271416 |
agatggtacaaagtgagtcctggaatcccc |
30271387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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